miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6641 5' -54.6 NC_001847.1 + 54655 0.66 0.925143
Target:  5'- gCAG-CGCCGCGCUGCGGAacgGggaGCg- -3'
miRNA:   3'- -GUCaGUGGCGUGACGCUUca-Ca--CGag -5'
6641 5' -54.6 NC_001847.1 + 116252 0.66 0.925143
Target:  5'- gCGGUaCGCgGCGCUGCGGAcucUGgcgccGCUCg -3'
miRNA:   3'- -GUCA-GUGgCGUGACGCUUc--ACa----CGAG- -5'
6641 5' -54.6 NC_001847.1 + 30412 0.66 0.913534
Target:  5'- uGGcCGCCGCGCcGCGgcGg--GCUCu -3'
miRNA:   3'- gUCaGUGGCGUGaCGCuuCacaCGAG- -5'
6641 5' -54.6 NC_001847.1 + 71218 0.66 0.913534
Target:  5'- ----gGCCGCGCUGggugaUGGAGUGUGC-Ca -3'
miRNA:   3'- gucagUGGCGUGAC-----GCUUCACACGaG- -5'
6641 5' -54.6 NC_001847.1 + 133225 0.66 0.913534
Target:  5'- uGGcCGCCGCGCcGCGgcGg--GCUCu -3'
miRNA:   3'- gUCaGUGGCGUGaCGCuuCacaCGAG- -5'
6641 5' -54.6 NC_001847.1 + 82839 0.66 0.912927
Target:  5'- cCGGUCguuuGCCGCGCgGCGuacGUccggcacGUGCUCg -3'
miRNA:   3'- -GUCAG----UGGCGUGaCGCuu-CA-------CACGAG- -5'
6641 5' -54.6 NC_001847.1 + 92874 0.66 0.907353
Target:  5'- uGG-CGCCGCGCgagcuCGAGGUGcUGCUg -3'
miRNA:   3'- gUCaGUGGCGUGac---GCUUCAC-ACGAg -5'
6641 5' -54.6 NC_001847.1 + 36594 0.66 0.907353
Target:  5'- aCGGcaCGCCGCuCUGCuaccGGGUGUGCUa -3'
miRNA:   3'- -GUCa-GUGGCGuGACGc---UUCACACGAg -5'
6641 5' -54.6 NC_001847.1 + 61737 0.66 0.903524
Target:  5'- cCGGUCGCCGUacgagugucGCUGCGAggcccacggguuaacGGUG-GCg- -3'
miRNA:   3'- -GUCAGUGGCG---------UGACGCU---------------UCACaCGag -5'
6641 5' -54.6 NC_001847.1 + 115817 0.66 0.900923
Target:  5'- ---gCGCUGCGCUGCGgcGg--GCUCu -3'
miRNA:   3'- gucaGUGGCGUGACGCuuCacaCGAG- -5'
6641 5' -54.6 NC_001847.1 + 3040 0.67 0.884494
Target:  5'- -cGUCugCGCGCccagcagccgcagGCGcAGGuUGUGCUCg -3'
miRNA:   3'- guCAGugGCGUGa------------CGC-UUC-ACACGAG- -5'
6641 5' -54.6 NC_001847.1 + 56129 0.67 0.872782
Target:  5'- gCGGUgcaCGCCGCGCaGCcuccGggGUG-GCUCa -3'
miRNA:   3'- -GUCA---GUGGCGUGaCG----CuuCACaCGAG- -5'
6641 5' -54.6 NC_001847.1 + 73816 0.67 0.857324
Target:  5'- uGGUCGCCGCGCUGCaGcGGcUGcGCg- -3'
miRNA:   3'- gUCAGUGGCGUGACG-CuUC-ACaCGag -5'
6641 5' -54.6 NC_001847.1 + 4317 0.67 0.857324
Target:  5'- ---gCGCCGC-CUGCG-GGUaGUGCUCc -3'
miRNA:   3'- gucaGUGGCGuGACGCuUCA-CACGAG- -5'
6641 5' -54.6 NC_001847.1 + 72062 0.68 0.815042
Target:  5'- cCGGUC-CCGCACcaugGCGAcgAGUG-GCUg -3'
miRNA:   3'- -GUCAGuGGCGUGa---CGCU--UCACaCGAg -5'
6641 5' -54.6 NC_001847.1 + 96874 0.69 0.796841
Target:  5'- gCGGU--CCGCGCUGgGGAGggaccgccGUGCUCg -3'
miRNA:   3'- -GUCAguGGCGUGACgCUUCa-------CACGAG- -5'
6641 5' -54.6 NC_001847.1 + 78260 0.69 0.796841
Target:  5'- -cGUCGCCGCgcaccuggacugGCcugcucgccucUGCGAGGcgGUGCUCg -3'
miRNA:   3'- guCAGUGGCG------------UG-----------ACGCUUCa-CACGAG- -5'
6641 5' -54.6 NC_001847.1 + 62091 0.7 0.752718
Target:  5'- gGGUCGCCGCGCgucauguacagguucUGCGgcGUGuUGCcCa -3'
miRNA:   3'- gUCAGUGGCGUG---------------ACGCuuCAC-ACGaG- -5'
6641 5' -54.6 NC_001847.1 + 79267 0.7 0.738773
Target:  5'- -cGUCggGCCGCGCgGCGAAGcgGUGC-Cg -3'
miRNA:   3'- guCAG--UGGCGUGaCGCUUCa-CACGaG- -5'
6641 5' -54.6 NC_001847.1 + 43642 0.71 0.687588
Target:  5'- aCAGggCGCgggCGCACgacggGCGAGuGUGUGCUCu -3'
miRNA:   3'- -GUCa-GUG---GCGUGa----CGCUU-CACACGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.