miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6642 3' -61.8 NC_001847.1 + 24512 0.66 0.675057
Target:  5'- cGCCgUGGGCGucGGGGCUCgCGcGCUg -3'
miRNA:   3'- cCGGgACCUGCucCCCUGGGaGC-UGA- -5'
6642 3' -61.8 NC_001847.1 + 4803 0.66 0.675057
Target:  5'- cGGCaugCUGGACGAGGcGcGcgauGCCCUUGAg- -3'
miRNA:   3'- -CCGg--GACCUGCUCC-C-C----UGGGAGCUga -5'
6642 3' -61.8 NC_001847.1 + 87679 0.66 0.675057
Target:  5'- uGGCCC-GGGCGcuGGGGCUgCUgCGGCg -3'
miRNA:   3'- -CCGGGaCCUGCucCCCUGG-GA-GCUGa -5'
6642 3' -61.8 NC_001847.1 + 66257 0.66 0.675057
Target:  5'- cGGCaugCUGGGCcGGGGaGGCCUcuUCGGCc -3'
miRNA:   3'- -CCGg--GACCUGcUCCC-CUGGG--AGCUGa -5'
6642 3' -61.8 NC_001847.1 + 61997 0.66 0.665277
Target:  5'- gGGCCCgaagaGcGGCGcGGGG-CCCUgCGGCc -3'
miRNA:   3'- -CCGGGa----C-CUGCuCCCCuGGGA-GCUGa -5'
6642 3' -61.8 NC_001847.1 + 419 0.66 0.665277
Target:  5'- gGGCCCgGGGCGGGcGGGCgg-CGGCg -3'
miRNA:   3'- -CCGGGaCCUGCUCcCCUGggaGCUGa -5'
6642 3' -61.8 NC_001847.1 + 103232 0.66 0.665277
Target:  5'- gGGCCCgGGGCGGGcGGGCgg-CGGCg -3'
miRNA:   3'- -CCGGGaCCUGCUCcCCUGggaGCUGa -5'
6642 3' -61.8 NC_001847.1 + 114814 0.66 0.655472
Target:  5'- uGCCCUGG-CGGuacauGGuCCCUCGGCg -3'
miRNA:   3'- cCGGGACCuGCUcc---CCuGGGAGCUGa -5'
6642 3' -61.8 NC_001847.1 + 59170 0.66 0.65449
Target:  5'- uGGCCaggGGGCggcggucGAGGGGGCCgUCGuaGCc -3'
miRNA:   3'- -CCGGga-CCUG-------CUCCCCUGGgAGC--UGa -5'
6642 3' -61.8 NC_001847.1 + 129322 0.66 0.64565
Target:  5'- gGGCCUgccGGGCGcggggccGGGGGCgUUCGGCc -3'
miRNA:   3'- -CCGGGa--CCUGCu------CCCCUGgGAGCUGa -5'
6642 3' -61.8 NC_001847.1 + 123623 0.66 0.64565
Target:  5'- cGGCaaaCUcGGcCGGGGcGGcGCCCUUGGCUg -3'
miRNA:   3'- -CCGg--GA-CCuGCUCC-CC-UGGGAGCUGA- -5'
6642 3' -61.8 NC_001847.1 + 127355 0.66 0.64565
Target:  5'- cGGCag-GGGCGGcGGGGCCCgagccUCGGCa -3'
miRNA:   3'- -CCGggaCCUGCUcCCCUGGG-----AGCUGa -5'
6642 3' -61.8 NC_001847.1 + 26509 0.66 0.64565
Target:  5'- gGGCCUgccGGGCGcggggccGGGGGCgUUCGGCc -3'
miRNA:   3'- -CCGGGa--CCUGCu------CCCCUGgGAGCUGa -5'
6642 3' -61.8 NC_001847.1 + 27855 0.66 0.625982
Target:  5'- cGGCgCCagGGACGcGGGGGGCgCCgagGACg -3'
miRNA:   3'- -CCG-GGa-CCUGC-UCCCCUG-GGag-CUGa -5'
6642 3' -61.8 NC_001847.1 + 130668 0.66 0.625982
Target:  5'- cGGCgCCagGGACGcGGGGGGCgCCgagGACg -3'
miRNA:   3'- -CCG-GGa-CCUGC-UCCCCUG-GGag-CUGa -5'
6642 3' -61.8 NC_001847.1 + 52675 0.66 0.625982
Target:  5'- cGGCCCcgUGGcCGGGGccGGGCCCgccgCGcCUg -3'
miRNA:   3'- -CCGGG--ACCuGCUCC--CCUGGGa---GCuGA- -5'
6642 3' -61.8 NC_001847.1 + 52446 0.66 0.625982
Target:  5'- uGGaCCUGGACGAcuGGGcGGCCCUgguggagGACg -3'
miRNA:   3'- -CCgGGACCUGCU--CCC-CUGGGAg------CUGa -5'
6642 3' -61.8 NC_001847.1 + 76389 0.66 0.625982
Target:  5'- cGGCCUcgggggGGGCGccGGGGGCCg-CGGCg -3'
miRNA:   3'- -CCGGGa-----CCUGCu-CCCCUGGgaGCUGa -5'
6642 3' -61.8 NC_001847.1 + 95697 0.66 0.625982
Target:  5'- cGCUCUGGcGCGGGGGGcggcgcggGCCgCUCuGGCg -3'
miRNA:   3'- cCGGGACC-UGCUCCCC--------UGG-GAG-CUGa -5'
6642 3' -61.8 NC_001847.1 + 95751 0.66 0.625982
Target:  5'- cGCUCUGGcGCGGGGGGcggcgcggGCCgCUCuGGCg -3'
miRNA:   3'- cCGGGACC-UGCUCCCC--------UGG-GAG-CUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.