miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6642 3' -61.8 NC_001847.1 + 95438 1.09 0.000916
Target:  5'- cGGCCCUGGACGAGGGGACCCUCGACUu -3'
miRNA:   3'- -CCGGGACCUGCUCCCCUGGGAGCUGA- -5'
6642 3' -61.8 NC_001847.1 + 29901 0.75 0.212145
Target:  5'- cGGCCCUGccggccgccGCGGGGGGcCCCUCGGg- -3'
miRNA:   3'- -CCGGGACc--------UGCUCCCCuGGGAGCUga -5'
6642 3' -61.8 NC_001847.1 + 48830 0.72 0.334357
Target:  5'- gGGCCUUGccGCGcGGGGGCgCCUCGGCc -3'
miRNA:   3'- -CCGGGACc-UGCuCCCCUG-GGAGCUGa -5'
6642 3' -61.8 NC_001847.1 + 29550 0.71 0.349072
Target:  5'- cGGCCCUGGAggccgcCGGcGGGGGCgC-CGGCg -3'
miRNA:   3'- -CCGGGACCU------GCU-CCCCUGgGaGCUGa -5'
6642 3' -61.8 NC_001847.1 + 132363 0.71 0.349072
Target:  5'- cGGCCCUGGAggccgcCGGcGGGGGCgC-CGGCg -3'
miRNA:   3'- -CCGGGACCU------GCU-CCCCUGgGaGCUGa -5'
6642 3' -61.8 NC_001847.1 + 111430 0.71 0.364243
Target:  5'- cGGCCggGGGCGGGGGGaggagcGCCCUacucaaaGACa -3'
miRNA:   3'- -CCGGgaCCUGCUCCCC------UGGGAg------CUGa -5'
6642 3' -61.8 NC_001847.1 + 8617 0.71 0.364243
Target:  5'- cGGCCggGGGCGGGGGGaggagcGCCCUacucaaaGACa -3'
miRNA:   3'- -CCGGgaCCUGCUCCCC------UGGGAg------CUGa -5'
6642 3' -61.8 NC_001847.1 + 124761 0.71 0.379073
Target:  5'- cGGCUCgcGGGCGgcaccggGGGGGGCUUUCGGCg -3'
miRNA:   3'- -CCGGGa-CCUGC-------UCCCCUGGGAGCUGa -5'
6642 3' -61.8 NC_001847.1 + 124560 0.71 0.387841
Target:  5'- cGGCCCgcgcGcGCGGGGGGGCCgC-CGGCg -3'
miRNA:   3'- -CCGGGa---CcUGCUCCCCUGG-GaGCUGa -5'
6642 3' -61.8 NC_001847.1 + 21747 0.71 0.387841
Target:  5'- cGGCCCgcgcGcGCGGGGGGGCCgC-CGGCg -3'
miRNA:   3'- -CCGGGa---CcUGCUCCCCUGG-GaGCUGa -5'
6642 3' -61.8 NC_001847.1 + 54394 0.7 0.418295
Target:  5'- cGGCCgC-GGGCGAGGcGGGCgccgccgcgguuggCCUCGGCg -3'
miRNA:   3'- -CCGG-GaCCUGCUCC-CCUG--------------GGAGCUGa -5'
6642 3' -61.8 NC_001847.1 + 46337 0.7 0.437078
Target:  5'- cGCCCgcgGGGcCGcgucggcggcaucGGGGGGCuCCUCGGCg -3'
miRNA:   3'- cCGGGa--CCU-GC-------------UCCCCUG-GGAGCUGa -5'
6642 3' -61.8 NC_001847.1 + 81248 0.69 0.455451
Target:  5'- gGGCCgUcgcgaGGACGGGGGGcccGCCCgcccccgCGGCg -3'
miRNA:   3'- -CCGGgA-----CCUGCUCCCC---UGGGa------GCUGa -5'
6642 3' -61.8 NC_001847.1 + 56870 0.69 0.464346
Target:  5'- cGGCCC-GGGCGcGGccacGGGCCCgccggCGACg -3'
miRNA:   3'- -CCGGGaCCUGCuCC----CCUGGGa----GCUGa -5'
6642 3' -61.8 NC_001847.1 + 60810 0.69 0.470625
Target:  5'- cGCCCgccagacacacugaUGGcGCGAGGGGcGCCCgCGGCg -3'
miRNA:   3'- cCGGG--------------ACC-UGCUCCCC-UGGGaGCUGa -5'
6642 3' -61.8 NC_001847.1 + 123873 0.69 0.47333
Target:  5'- cGGCCCUGaGGCccuGGGGcGGGgCC-CGACUg -3'
miRNA:   3'- -CCGGGAC-CUG---CUCC-CCUgGGaGCUGA- -5'
6642 3' -61.8 NC_001847.1 + 21060 0.69 0.47333
Target:  5'- cGGCCCUGaGGCccuGGGGcGGGgCC-CGACUg -3'
miRNA:   3'- -CCGGGAC-CUG---CUCC-CCUgGGaGCUGA- -5'
6642 3' -61.8 NC_001847.1 + 49592 0.69 0.47333
Target:  5'- cGGCgCCUGGGCGcAGcGGGAgC-UCGGCg -3'
miRNA:   3'- -CCG-GGACCUGC-UC-CCCUgGgAGCUGa -5'
6642 3' -61.8 NC_001847.1 + 28072 0.69 0.48149
Target:  5'- aGGCCgaagcggggaCUGaGGCGGGGGGcggcgguGCCCUCGGg- -3'
miRNA:   3'- -CCGG----------GAC-CUGCUCCCC-------UGGGAGCUga -5'
6642 3' -61.8 NC_001847.1 + 130885 0.69 0.48149
Target:  5'- aGGCCgaagcggggaCUGaGGCGGGGGGcggcgguGCCCUCGGg- -3'
miRNA:   3'- -CCGG----------GAC-CUGCUCCCC-------UGGGAGCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.