miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6642 3' -61.8 NC_001847.1 + 13904 0.68 0.538437
Target:  5'- cGGUguuCCUGGugGAguuccGGGaGGCCCgCGACg -3'
miRNA:   3'- -CCG---GGACCugCU-----CCC-CUGGGaGCUGa -5'
6642 3' -61.8 NC_001847.1 + 135126 0.69 0.491555
Target:  5'- -cCCCgGGGuCGcAGGGGGCCCgcgCGGCg -3'
miRNA:   3'- ccGGGaCCU-GC-UCCCCUGGGa--GCUGa -5'
6642 3' -61.8 NC_001847.1 + 111279 0.68 0.500788
Target:  5'- cGGCgCCgGGcCGGGGGcGGCgCUCGGCc -3'
miRNA:   3'- -CCG-GGaCCuGCUCCC-CUGgGAGCUGa -5'
6642 3' -61.8 NC_001847.1 + 132714 0.68 0.500788
Target:  5'- cGGCCCUGccGGCcgccgcGGGGGcCCCUCGGg- -3'
miRNA:   3'- -CCGGGAC--CUGc-----UCCCCuGGGAGCUga -5'
6642 3' -61.8 NC_001847.1 + 116756 0.68 0.509163
Target:  5'- gGGCCCgcaGGCGAGGacgccgaggcaucGGGCCCgcCGACg -3'
miRNA:   3'- -CCGGGac-CUGCUCC-------------CCUGGGa-GCUGa -5'
6642 3' -61.8 NC_001847.1 + 99779 0.68 0.510098
Target:  5'- cGGCUUUGGGCGGGGGGcagcGCCUguggugCGGg- -3'
miRNA:   3'- -CCGGGACCUGCUCCCC----UGGGa-----GCUga -5'
6642 3' -61.8 NC_001847.1 + 131016 0.68 0.525139
Target:  5'- gGGCCCgaGGACGAuGGGGgcgagGCCCgggaggggagcacCGACg -3'
miRNA:   3'- -CCGGGa-CCUGCU-CCCC-----UGGGa------------GCUGa -5'
6642 3' -61.8 NC_001847.1 + 134414 0.68 0.528926
Target:  5'- gGGCCCgcgGGAagggaggGAGGGGGCgCgacggCGGCa -3'
miRNA:   3'- -CCGGGa--CCUg------CUCCCCUGgGa----GCUGa -5'
6642 3' -61.8 NC_001847.1 + 95335 0.68 0.535577
Target:  5'- gGGCCCgccgcGGACGAcgcggucgacuggcGGGGGCUggCGGCg -3'
miRNA:   3'- -CCGGGa----CCUGCU--------------CCCCUGGgaGCUGa -5'
6642 3' -61.8 NC_001847.1 + 76653 0.69 0.491555
Target:  5'- uGCCCgaGGGCGGGGaGGGCgCCuuuuUCGACc -3'
miRNA:   3'- cCGGGa-CCUGCUCC-CCUG-GG----AGCUGa -5'
6642 3' -61.8 NC_001847.1 + 130885 0.69 0.48149
Target:  5'- aGGCCgaagcggggaCUGaGGCGGGGGGcggcgguGCCCUCGGg- -3'
miRNA:   3'- -CCGG----------GAC-CUGCUCCCC-------UGGGAGCUga -5'
6642 3' -61.8 NC_001847.1 + 123873 0.69 0.47333
Target:  5'- cGGCCCUGaGGCccuGGGGcGGGgCC-CGACUg -3'
miRNA:   3'- -CCGGGAC-CUG---CUCC-CCUgGGaGCUGA- -5'
6642 3' -61.8 NC_001847.1 + 48830 0.72 0.334357
Target:  5'- gGGCCUUGccGCGcGGGGGCgCCUCGGCc -3'
miRNA:   3'- -CCGGGACc-UGCuCCCCUG-GGAGCUGa -5'
6642 3' -61.8 NC_001847.1 + 132363 0.71 0.349072
Target:  5'- cGGCCCUGGAggccgcCGGcGGGGGCgC-CGGCg -3'
miRNA:   3'- -CCGGGACCU------GCU-CCCCUGgGaGCUGa -5'
6642 3' -61.8 NC_001847.1 + 111430 0.71 0.364243
Target:  5'- cGGCCggGGGCGGGGGGaggagcGCCCUacucaaaGACa -3'
miRNA:   3'- -CCGGgaCCUGCUCCCC------UGGGAg------CUGa -5'
6642 3' -61.8 NC_001847.1 + 124761 0.71 0.379073
Target:  5'- cGGCUCgcGGGCGgcaccggGGGGGGCUUUCGGCg -3'
miRNA:   3'- -CCGGGa-CCUGC-------UCCCCUGGGAGCUGa -5'
6642 3' -61.8 NC_001847.1 + 124560 0.71 0.387841
Target:  5'- cGGCCCgcgcGcGCGGGGGGGCCgC-CGGCg -3'
miRNA:   3'- -CCGGGa---CcUGCUCCCCUGG-GaGCUGa -5'
6642 3' -61.8 NC_001847.1 + 54394 0.7 0.418295
Target:  5'- cGGCCgC-GGGCGAGGcGGGCgccgccgcgguuggCCUCGGCg -3'
miRNA:   3'- -CCGG-GaCCUGCUCC-CCUG--------------GGAGCUGa -5'
6642 3' -61.8 NC_001847.1 + 56870 0.69 0.464346
Target:  5'- cGGCCC-GGGCGcGGccacGGGCCCgccggCGACg -3'
miRNA:   3'- -CCGGGaCCUGCuCC----CCUGGGa----GCUGa -5'
6642 3' -61.8 NC_001847.1 + 60810 0.69 0.470625
Target:  5'- cGCCCgccagacacacugaUGGcGCGAGGGGcGCCCgCGGCg -3'
miRNA:   3'- cCGGG--------------ACC-UGCUCCCC-UGGGaGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.