miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6642 5' -52.6 NC_001847.1 + 91483 0.66 0.978072
Target:  5'- aGCAcCUGCGGcGggCCAcccgagcccucgcgcGCGUCCUGCa -3'
miRNA:   3'- -CGUuGAUGCU-CaaGGU---------------CGCGGGAUGc -5'
6642 5' -52.6 NC_001847.1 + 34253 0.66 0.977099
Target:  5'- cGCGGC-GCGAGgcgcagaCCGGCGCgCgGCGg -3'
miRNA:   3'- -CGUUGaUGCUCaa-----GGUCGCGgGaUGC- -5'
6642 5' -52.6 NC_001847.1 + 14133 0.66 0.977099
Target:  5'- gGCGAUggGCGGGgcCC-GCGCCUggGCGg -3'
miRNA:   3'- -CGUUGa-UGCUCaaGGuCGCGGGa-UGC- -5'
6642 5' -52.6 NC_001847.1 + 98254 0.66 0.977099
Target:  5'- gGCGGCggggcaGCGuAGUcgCCAGCaGCCCcGCGu -3'
miRNA:   3'- -CGUUGa-----UGC-UCAa-GGUCG-CGGGaUGC- -5'
6642 5' -52.6 NC_001847.1 + 37590 0.66 0.976851
Target:  5'- uGCGGCUGCGgcggccgGGggCCGGCccgcgcucuuuuGCCCgACGg -3'
miRNA:   3'- -CGUUGAUGC-------UCaaGGUCG------------CGGGaUGC- -5'
6642 5' -52.6 NC_001847.1 + 3257 0.66 0.974527
Target:  5'- gGCGGC-AgGGGcgCCGGCGCCgcGCGg -3'
miRNA:   3'- -CGUUGaUgCUCaaGGUCGCGGgaUGC- -5'
6642 5' -52.6 NC_001847.1 + 29067 0.66 0.974527
Target:  5'- cCGGCcGCGcGGcgCCGGCGCcCCUGCc -3'
miRNA:   3'- cGUUGaUGC-UCaaGGUCGCG-GGAUGc -5'
6642 5' -52.6 NC_001847.1 + 47331 0.66 0.974527
Target:  5'- uGCAGCggGCGAuUUCCAGUaaGCaCUGCGc -3'
miRNA:   3'- -CGUUGa-UGCUcAAGGUCG--CGgGAUGC- -5'
6642 5' -52.6 NC_001847.1 + 101706 0.66 0.974527
Target:  5'- aGCGACgcccGCGAcg-CCgAGCGCCCguuuaugGCGg -3'
miRNA:   3'- -CGUUGa---UGCUcaaGG-UCGCGGGa------UGC- -5'
6642 5' -52.6 NC_001847.1 + 132081 0.66 0.974527
Target:  5'- uGC-ACUACGAGcacaaCCuGCGC-CUGCGg -3'
miRNA:   3'- -CGuUGAUGCUCaa---GGuCGCGgGAUGC- -5'
6642 5' -52.6 NC_001847.1 + 12008 0.66 0.974527
Target:  5'- cGCAcGC-ACccGUUCCAGCGCCCcucugcccgGCGg -3'
miRNA:   3'- -CGU-UGaUGcuCAAGGUCGCGGGa--------UGC- -5'
6642 5' -52.6 NC_001847.1 + 131218 0.66 0.974527
Target:  5'- cGCGGCgccagcGCGGGcgcgcaaCCGGCGCCC-GCGc -3'
miRNA:   3'- -CGUUGa-----UGCUCaa-----GGUCGCGGGaUGC- -5'
6642 5' -52.6 NC_001847.1 + 28405 0.66 0.974527
Target:  5'- cGCGGCgccagcGCGGGcgcgcaaCCGGCGCCC-GCGc -3'
miRNA:   3'- -CGUUGa-----UGCUCaa-----GGUCGCGGGaUGC- -5'
6642 5' -52.6 NC_001847.1 + 116313 0.66 0.974527
Target:  5'- uGCGGCgcgcGCGAGgacgCC-GUGCCCaUGCGc -3'
miRNA:   3'- -CGUUGa---UGCUCaa--GGuCGCGGG-AUGC- -5'
6642 5' -52.6 NC_001847.1 + 106070 0.66 0.974527
Target:  5'- gGCGGC-AgGGGcgCCGGCGCCgcGCGg -3'
miRNA:   3'- -CGUUGaUgCUCaaGGUCGCGGgaUGC- -5'
6642 5' -52.6 NC_001847.1 + 131880 0.66 0.974527
Target:  5'- cCGGCcGCGcGGcgCCGGCGCcCCUGCc -3'
miRNA:   3'- cGUUGaUGC-UCaaGGUCGCG-GGAUGc -5'
6642 5' -52.6 NC_001847.1 + 94244 0.66 0.974527
Target:  5'- cGCGGCgcCGuGgagcggCUcGCGCCCUGCGu -3'
miRNA:   3'- -CGUUGauGCuCaa----GGuCGCGGGAUGC- -5'
6642 5' -52.6 NC_001847.1 + 107930 0.66 0.971751
Target:  5'- cGCAGCU-CGAGcgCCccggcGCGCCCg--- -3'
miRNA:   3'- -CGUUGAuGCUCaaGGu----CGCGGGaugc -5'
6642 5' -52.6 NC_001847.1 + 50662 0.66 0.971751
Target:  5'- aGCAcGCUG-GAGggCgAcGUGCCCUGCGg -3'
miRNA:   3'- -CGU-UGAUgCUCaaGgU-CGCGGGAUGC- -5'
6642 5' -52.6 NC_001847.1 + 104883 0.66 0.971751
Target:  5'- cGCAGCggugGCGg---CgAGCGCCCcGCGg -3'
miRNA:   3'- -CGUUGa---UGCucaaGgUCGCGGGaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.