miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6642 5' -52.6 NC_001847.1 + 579 0.66 0.971751
Target:  5'- gGCGGCgACGAGgccgUCUuuGUGUCCUGCc -3'
miRNA:   3'- -CGUUGaUGCUCa---AGGu-CGCGGGAUGc -5'
6642 5' -52.6 NC_001847.1 + 1325 0.66 0.965557
Target:  5'- cCGGCUcccCGAGccCCAgcgccGCGCCCUGCGc -3'
miRNA:   3'- cGUUGAu--GCUCaaGGU-----CGCGGGAUGC- -5'
6642 5' -52.6 NC_001847.1 + 2070 0.66 0.971751
Target:  5'- cGCAGCggugGCGg---CgAGCGCCCcGCGg -3'
miRNA:   3'- -CGUUGa---UGCucaaGgUCGCGGGaUGC- -5'
6642 5' -52.6 NC_001847.1 + 2759 0.71 0.834007
Target:  5'- cGCGGCgGCGccGGcgCCGGCGCCCccgccgGCGg -3'
miRNA:   3'- -CGUUGaUGC--UCaaGGUCGCGGGa-----UGC- -5'
6642 5' -52.6 NC_001847.1 + 3157 0.77 0.512918
Target:  5'- gGCGGCgcgGCGGGccgccUCCAGCGCCUcGCGg -3'
miRNA:   3'- -CGUUGa--UGCUCa----AGGUCGCGGGaUGC- -5'
6642 5' -52.6 NC_001847.1 + 3257 0.66 0.974527
Target:  5'- gGCGGC-AgGGGcgCCGGCGCCgcGCGg -3'
miRNA:   3'- -CGUUGaUgCUCaaGGUCGCGGgaUGC- -5'
6642 5' -52.6 NC_001847.1 + 3299 0.69 0.895371
Target:  5'- cGCAGCUcgGCGAGcgcggcgCgGGCGCCgCUGCc -3'
miRNA:   3'- -CGUUGA--UGCUCaa-----GgUCGCGG-GAUGc -5'
6642 5' -52.6 NC_001847.1 + 3998 0.66 0.968763
Target:  5'- cGCGGCcccGCGGGgcgccgggcCCGGCGCCCgccucucGCGg -3'
miRNA:   3'- -CGUUGa--UGCUCaa-------GGUCGCGGGa------UGC- -5'
6642 5' -52.6 NC_001847.1 + 4279 0.72 0.770095
Target:  5'- gGCGGCcACGAGgcgcgcgCCGGCGCCUUGg- -3'
miRNA:   3'- -CGUUGaUGCUCaa-----GGUCGCGGGAUgc -5'
6642 5' -52.6 NC_001847.1 + 6893 0.71 0.807605
Target:  5'- aGCAguGCgucgGCGAGcgCgCGcGCGCCCUGCGc -3'
miRNA:   3'- -CGU--UGa---UGCUCaaG-GU-CGCGGGAUGC- -5'
6642 5' -52.6 NC_001847.1 + 8227 0.67 0.95457
Target:  5'- aGCAGCUGCG----CCAcGCGCuggCCUGCGg -3'
miRNA:   3'- -CGUUGAUGCucaaGGU-CGCG---GGAUGC- -5'
6642 5' -52.6 NC_001847.1 + 8640 0.68 0.92604
Target:  5'- gGCcGCUGCGGacUCgGGCGCCCagACGa -3'
miRNA:   3'- -CGuUGAUGCUcaAGgUCGCGGGa-UGC- -5'
6642 5' -52.6 NC_001847.1 + 9409 0.69 0.895371
Target:  5'- aCGAUUACGAGUa-CAGCGaCCUUugGg -3'
miRNA:   3'- cGUUGAUGCUCAagGUCGC-GGGAugC- -5'
6642 5' -52.6 NC_001847.1 + 12008 0.66 0.974527
Target:  5'- cGCAcGC-ACccGUUCCAGCGCCCcucugcccgGCGg -3'
miRNA:   3'- -CGU-UGaUGcuCAAGGUCGCGGGa--------UGC- -5'
6642 5' -52.6 NC_001847.1 + 12080 0.73 0.720363
Target:  5'- cGCGgaGCgccGCGGG-UCCGGCGCCC-GCGg -3'
miRNA:   3'- -CGU--UGa--UGCUCaAGGUCGCGGGaUGC- -5'
6642 5' -52.6 NC_001847.1 + 13809 0.68 0.92604
Target:  5'- cGCAGCggugUACGGGggCCGGCGUgUgACGg -3'
miRNA:   3'- -CGUUG----AUGCUCaaGGUCGCGgGaUGC- -5'
6642 5' -52.6 NC_001847.1 + 14133 0.66 0.977099
Target:  5'- gGCGAUggGCGGGgcCC-GCGCCUggGCGg -3'
miRNA:   3'- -CGUUGa-UGCUCaaGGuCGCGGGa-UGC- -5'
6642 5' -52.6 NC_001847.1 + 14806 0.75 0.616109
Target:  5'- cGCAGCgGCgGAGcugCgCGGCGCCCUGCGc -3'
miRNA:   3'- -CGUUGaUG-CUCaa-G-GUCGCGGGAUGC- -5'
6642 5' -52.6 NC_001847.1 + 16425 0.68 0.92604
Target:  5'- cGCGuCUGCGAGg-CCGGCGacgaCUACGa -3'
miRNA:   3'- -CGUuGAUGCUCaaGGUCGCgg--GAUGC- -5'
6642 5' -52.6 NC_001847.1 + 17087 0.69 0.908386
Target:  5'- gGCAAuCUGCGAGgucggggUCgGGguCGUCCUGCGg -3'
miRNA:   3'- -CGUU-GAUGCUCa------AGgUC--GCGGGAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.