miRNA display CGI


Results 1 - 20 of 385 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6643 3' -53.3 NC_001847.1 + 78691 0.66 0.963979
Target:  5'- gGGCGCUGguG-CCGG-GCAgcACGCGa -3'
miRNA:   3'- aCCGUGACguCuGGCUgUGUa-UGUGC- -5'
6643 3' -53.3 NC_001847.1 + 39147 0.66 0.963979
Target:  5'- gGGCucgaaaaucGCUGCcGGCCG-CGCAgcCGCGg -3'
miRNA:   3'- aCCG---------UGACGuCUGGCuGUGUauGUGC- -5'
6643 3' -53.3 NC_001847.1 + 43600 0.66 0.963979
Target:  5'- gUGGCGCUG-GGGCCGGUGCuggcCACGg -3'
miRNA:   3'- -ACCGUGACgUCUGGCUGUGuau-GUGC- -5'
6643 3' -53.3 NC_001847.1 + 130913 0.66 0.963979
Target:  5'- cGGCGgUGCccucggggccaGGACCGAgGCcgGCgACGu -3'
miRNA:   3'- aCCGUgACG-----------UCUGGCUgUGuaUG-UGC- -5'
6643 3' -53.3 NC_001847.1 + 43112 0.66 0.963979
Target:  5'- aGGCGCcgGCGGugCc-CGCAgacgGCGCGg -3'
miRNA:   3'- aCCGUGa-CGUCugGcuGUGUa---UGUGC- -5'
6643 3' -53.3 NC_001847.1 + 12057 0.66 0.963979
Target:  5'- cUGcGCGCUGCGGacGCCGAgGC---CGCGg -3'
miRNA:   3'- -AC-CGUGACGUC--UGGCUgUGuauGUGC- -5'
6643 3' -53.3 NC_001847.1 + 61949 0.66 0.963979
Target:  5'- cGGCGCggcccgcGCGGGCCGACuccgccgccGCGUcCGCc -3'
miRNA:   3'- aCCGUGa------CGUCUGGCUG---------UGUAuGUGc -5'
6643 3' -53.3 NC_001847.1 + 14018 0.66 0.963979
Target:  5'- cGGCA--GCAGGCggCGGCGCA-GCGCGc -3'
miRNA:   3'- aCCGUgaCGUCUG--GCUGUGUaUGUGC- -5'
6643 3' -53.3 NC_001847.1 + 28100 0.66 0.963979
Target:  5'- cGGCGgUGCccucggggccaGGACCGAgGCcgGCgACGu -3'
miRNA:   3'- aCCGUgACG-----------UCUGGCUgUGuaUG-UGC- -5'
6643 3' -53.3 NC_001847.1 + 124544 0.66 0.963979
Target:  5'- gGGC---GCGGGCCGGCGCcgGCccGCGc -3'
miRNA:   3'- aCCGugaCGUCUGGCUGUGuaUG--UGC- -5'
6643 3' -53.3 NC_001847.1 + 33547 0.66 0.963979
Target:  5'- gGGCGCcgaagaggcgGCAGACgccgcggaggCGGC-CGUGCGCGg -3'
miRNA:   3'- aCCGUGa---------CGUCUG----------GCUGuGUAUGUGC- -5'
6643 3' -53.3 NC_001847.1 + 50374 0.66 0.963979
Target:  5'- cGGCGucgccCUGCuGGCCGugGcCAUGCuCGu -3'
miRNA:   3'- aCCGU-----GACGuCUGGCugU-GUAUGuGC- -5'
6643 3' -53.3 NC_001847.1 + 93744 0.66 0.963979
Target:  5'- cGGCAgCUGgAGGCCG-CGCGgcUGCcgGCGg -3'
miRNA:   3'- aCCGU-GACgUCUGGCuGUGU--AUG--UGC- -5'
6643 3' -53.3 NC_001847.1 + 62152 0.66 0.963979
Target:  5'- -cGCGCUGCGGccagcucccgcGCgGGCGCGUcCGCGu -3'
miRNA:   3'- acCGUGACGUC-----------UGgCUGUGUAuGUGC- -5'
6643 3' -53.3 NC_001847.1 + 21731 0.66 0.963979
Target:  5'- gGGC---GCGGGCCGGCGCcgGCccGCGc -3'
miRNA:   3'- aCCGugaCGUCUGGCUGUGuaUG--UGC- -5'
6643 3' -53.3 NC_001847.1 + 112097 0.66 0.963979
Target:  5'- cGGCGCaagGUGGACUGGCuCGagcgGCGCGu -3'
miRNA:   3'- aCCGUGa--CGUCUGGCUGuGUa---UGUGC- -5'
6643 3' -53.3 NC_001847.1 + 55440 0.66 0.963979
Target:  5'- cGGUcCUGCAGcGCCuGGCGCcgGCGgGg -3'
miRNA:   3'- aCCGuGACGUC-UGG-CUGUGuaUGUgC- -5'
6643 3' -53.3 NC_001847.1 + 122371 0.66 0.963979
Target:  5'- cUGGUACuuccUGCGGacgGCCGGCGacUGCGCGc -3'
miRNA:   3'- -ACCGUG----ACGUC---UGGCUGUguAUGUGC- -5'
6643 3' -53.3 NC_001847.1 + 40119 0.66 0.963979
Target:  5'- aGGUgcgGCUGCGcgugggcgaguGAUUgGACACAUGCGCGc -3'
miRNA:   3'- aCCG---UGACGU-----------CUGG-CUGUGUAUGUGC- -5'
6643 3' -53.3 NC_001847.1 + 35572 0.66 0.963979
Target:  5'- gUGcGCGCUuuGGAgCGGCGCcgGCGCa -3'
miRNA:   3'- -AC-CGUGAcgUCUgGCUGUGuaUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.