miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6643 5' -65.3 NC_001847.1 + 132157 0.66 0.458976
Target:  5'- cGCGCggcuCCAgCGCGCggCCCCggcggCGCUGCg -3'
miRNA:   3'- aUGCG----GGU-GCGCGg-GGGGa----GCGACGa -5'
6643 5' -65.3 NC_001847.1 + 18592 0.66 0.458976
Target:  5'- gUGCGCCauuaGCGCGCCgUCCgcggCGUcgGCg -3'
miRNA:   3'- -AUGCGGg---UGCGCGGgGGGa---GCGa-CGa -5'
6643 5' -65.3 NC_001847.1 + 29344 0.66 0.458976
Target:  5'- cGCGCggcuCCAgCGCGCggCCCCggcggCGCUGCg -3'
miRNA:   3'- aUGCG----GGU-GCGCGg-GGGGa----GCGACGa -5'
6643 5' -65.3 NC_001847.1 + 30191 0.66 0.458976
Target:  5'- gGCGCCCG-GCGCUcgccuucgaCCCCgaggCGCUGg- -3'
miRNA:   3'- aUGCGGGUgCGCGG---------GGGGa---GCGACga -5'
6643 5' -65.3 NC_001847.1 + 51831 0.66 0.458976
Target:  5'- gGCGCCaa-GCGCCCCCgUgCGCggGUc -3'
miRNA:   3'- aUGCGGgugCGCGGGGGgA-GCGa-CGa -5'
6643 5' -65.3 NC_001847.1 + 71732 0.66 0.458976
Target:  5'- gGCGCCgCGUGCGCUCCCgUgcgagGCUGCg -3'
miRNA:   3'- aUGCGG-GUGCGCGGGGGgAg----CGACGa -5'
6643 5' -65.3 NC_001847.1 + 133004 0.66 0.458976
Target:  5'- gGCGCCCG-GCGCUcgccuucgaCCCCgaggCGCUGg- -3'
miRNA:   3'- aUGCGGGUgCGCGG---------GGGGa---GCGACga -5'
6643 5' -65.3 NC_001847.1 + 105813 0.66 0.458976
Target:  5'- -cCGCCCGCGCaCUCgCgCUCGCgGCUc -3'
miRNA:   3'- auGCGGGUGCGcGGGgG-GAGCGaCGA- -5'
6643 5' -65.3 NC_001847.1 + 2692 0.66 0.458976
Target:  5'- -uCGUCCucCGCGCCCUCCagcuugCGCUuGCg -3'
miRNA:   3'- auGCGGGu-GCGCGGGGGGa-----GCGA-CGa -5'
6643 5' -65.3 NC_001847.1 + 132584 0.66 0.458976
Target:  5'- gGCGCCCGCGCcgaagacaGCCCgCCggagaGCaGCg -3'
miRNA:   3'- aUGCGGGUGCG--------CGGGgGGag---CGaCGa -5'
6643 5' -65.3 NC_001847.1 + 78019 0.66 0.458976
Target:  5'- cACGgCCAUgGCGUCCCCCaacaugCGCgcgGCg -3'
miRNA:   3'- aUGCgGGUG-CGCGGGGGGa-----GCGa--CGa -5'
6643 5' -65.3 NC_001847.1 + 66582 0.66 0.458976
Target:  5'- cGCGCgCGCG-GUUCCCCUCGCcccuucugGCg -3'
miRNA:   3'- aUGCGgGUGCgCGGGGGGAGCGa-------CGa -5'
6643 5' -65.3 NC_001847.1 + 32015 0.66 0.458976
Target:  5'- cGCGCCgGCG-GCCCgCgCUCGC-GCg -3'
miRNA:   3'- aUGCGGgUGCgCGGGgG-GAGCGaCGa -5'
6643 5' -65.3 NC_001847.1 + 991 0.66 0.458089
Target:  5'- --gGCCCGCaGCaccuucuGCCCCCaccaGCUGCUa -3'
miRNA:   3'- augCGGGUG-CG-------CGGGGGgag-CGACGA- -5'
6643 5' -65.3 NC_001847.1 + 76556 0.66 0.458089
Target:  5'- uUACuGCCCACGCagccggcggcccgGCCCCCgaucUUCGCcGCc -3'
miRNA:   3'- -AUG-CGGGUGCG-------------CGGGGG----GAGCGaCGa -5'
6643 5' -65.3 NC_001847.1 + 305 0.66 0.450149
Target:  5'- -cCGUCCcCGCGCCCCgC-CGgaGCUu -3'
miRNA:   3'- auGCGGGuGCGCGGGGgGaGCgaCGA- -5'
6643 5' -65.3 NC_001847.1 + 101615 0.66 0.450149
Target:  5'- gGCGCCCGCGCccgGCgCCUC-CGCgGCn -3'
miRNA:   3'- aUGCGGGUGCG---CGgGGGGaGCGaCGa -5'
6643 5' -65.3 NC_001847.1 + 94972 0.66 0.450149
Target:  5'- -cCGCCgCGCGCaGCCCCCgCggcuuuggCGCaGCUg -3'
miRNA:   3'- auGCGG-GUGCG-CGGGGG-Ga-------GCGaCGA- -5'
6643 5' -65.3 NC_001847.1 + 74271 0.66 0.450149
Target:  5'- gGgGCCCGCGCGCgCgCUCgCGCUGg- -3'
miRNA:   3'- aUgCGGGUGCGCGgG-GGGaGCGACga -5'
6643 5' -65.3 NC_001847.1 + 115108 0.66 0.450149
Target:  5'- cGCGCCCAgggcggcggcCGCaggGCCgCCCUauuggaagugCGCUGCUc -3'
miRNA:   3'- aUGCGGGU----------GCG---CGGgGGGA----------GCGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.