miRNA display CGI


Results 1 - 20 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6643 5' -65.3 NC_001847.1 + 26636 0.66 0.415808
Target:  5'- --aGCCCuCGUGCUCCaagCGCUGCg -3'
miRNA:   3'- augCGGGuGCGCGGGGggaGCGACGa -5'
6643 5' -65.3 NC_001847.1 + 58384 0.66 0.424243
Target:  5'- -cCGCCUuuGCGUGCCCCCCgccCGa-GCg -3'
miRNA:   3'- auGCGGG--UGCGCGGGGGGa--GCgaCGa -5'
6643 5' -65.3 NC_001847.1 + 112933 0.66 0.43278
Target:  5'- cACGCCCACGgaCGCgUgCUgggaggCGCUGCUg -3'
miRNA:   3'- aUGCGGGUGC--GCGgGgGGa-----GCGACGA- -5'
6643 5' -65.3 NC_001847.1 + 113421 0.66 0.415808
Target:  5'- gGCGCCgGCccGCGCCCUgCUgGC-GCUg -3'
miRNA:   3'- aUGCGGgUG--CGCGGGGgGAgCGaCGA- -5'
6643 5' -65.3 NC_001847.1 + 46902 0.66 0.415808
Target:  5'- gGCGCCCGCGcCGCgCCggCCUCgGCUccgGCg -3'
miRNA:   3'- aUGCGGGUGC-GCGgGG--GGAG-CGA---CGa -5'
6643 5' -65.3 NC_001847.1 + 121902 0.66 0.407476
Target:  5'- -cCGCCCGCGUGgCCCCgCUgGCcaucGCg -3'
miRNA:   3'- auGCGGGUGCGCgGGGG-GAgCGa---CGa -5'
6643 5' -65.3 NC_001847.1 + 65892 0.66 0.408304
Target:  5'- -cCGCCCAUGCGCCacgcgcuuuuuuucgCCgUCGCgGCg -3'
miRNA:   3'- auGCGGGUGCGCGGg--------------GGgAGCGaCGa -5'
6643 5' -65.3 NC_001847.1 + 105813 0.66 0.458976
Target:  5'- -cCGCCCGCGCaCUCgCgCUCGCgGCUc -3'
miRNA:   3'- auGCGGGUGCGcGGGgG-GAGCGaCGA- -5'
6643 5' -65.3 NC_001847.1 + 92186 0.66 0.424243
Target:  5'- gGCGgCC-CGCcCCCCCCgcgCGCgGCg -3'
miRNA:   3'- aUGCgGGuGCGcGGGGGGa--GCGaCGa -5'
6643 5' -65.3 NC_001847.1 + 119265 0.66 0.430208
Target:  5'- gGCGCCCGCGCGgCUCgucgagggccaguaCCgacgcgCGCUGUa -3'
miRNA:   3'- aUGCGGGUGCGCgGGG--------------GGa-----GCGACGa -5'
6643 5' -65.3 NC_001847.1 + 74763 0.66 0.43278
Target:  5'- cGCgGUCgGCGCGCgCCCCCUgGCgaagGUg -3'
miRNA:   3'- aUG-CGGgUGCGCG-GGGGGAgCGa---CGa -5'
6643 5' -65.3 NC_001847.1 + 18711 0.66 0.415808
Target:  5'- aGCGCCCAC-CGCCCucgagCCCaagCGCgcgGCc -3'
miRNA:   3'- aUGCGGGUGcGCGGG-----GGGa--GCGa--CGa -5'
6643 5' -65.3 NC_001847.1 + 35978 0.66 0.407476
Target:  5'- gGCGCCaagGCGCGCgCagCCgCGCUGCa -3'
miRNA:   3'- aUGCGGg--UGCGCGgGg-GGaGCGACGa -5'
6643 5' -65.3 NC_001847.1 + 130279 0.66 0.407476
Target:  5'- cGCuGCCCGcCGCcccCCCCCCUCccCUGCg -3'
miRNA:   3'- aUG-CGGGU-GCGc--GGGGGGAGc-GACGa -5'
6643 5' -65.3 NC_001847.1 + 24130 0.66 0.407476
Target:  5'- --aGCCCGCGCGCgaa-CUUGCUGCg -3'
miRNA:   3'- augCGGGUGCGCGggggGAGCGACGa -5'
6643 5' -65.3 NC_001847.1 + 109257 0.66 0.424243
Target:  5'- cGCaCCC-CGCuccuCCUCCCUUGCUGCa -3'
miRNA:   3'- aUGcGGGuGCGc---GGGGGGAGCGACGa -5'
6643 5' -65.3 NC_001847.1 + 104785 0.66 0.407476
Target:  5'- gGCgGCCCGCcaGCGCCuCCCCggGCaGCg -3'
miRNA:   3'- aUG-CGGGUG--CGCGG-GGGGagCGaCGa -5'
6643 5' -65.3 NC_001847.1 + 10073 0.66 0.407476
Target:  5'- cGgGCCCA-GCGCCCCgCCgcgCGCgggaGCa -3'
miRNA:   3'- aUgCGGGUgCGCGGGG-GGa--GCGa---CGa -5'
6643 5' -65.3 NC_001847.1 + 4975 0.66 0.43278
Target:  5'- gGCGCCCGCGgGgUCgugacgUCCUCGCaGCUg -3'
miRNA:   3'- aUGCGGGUGCgCgGG------GGGAGCGaCGA- -5'
6643 5' -65.3 NC_001847.1 + 120977 0.66 0.424243
Target:  5'- -gUGCCUuuaGCGCgGCCgCCCCggccgcCGCUGCg -3'
miRNA:   3'- auGCGGG---UGCG-CGG-GGGGa-----GCGACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.