miRNA display CGI


Results 21 - 40 of 358 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6643 5' -65.3 NC_001847.1 + 74271 0.66 0.450149
Target:  5'- gGgGCCCGCGCGCgCgCUCgCGCUGg- -3'
miRNA:   3'- aUgCGGGUGCGCGgG-GGGaGCGACga -5'
6643 5' -65.3 NC_001847.1 + 103118 0.66 0.450149
Target:  5'- -cCGUCCcCGCGCCCCgC-CGgaGCUu -3'
miRNA:   3'- auGCGGGuGCGCGGGGgGaGCgaCGA- -5'
6643 5' -65.3 NC_001847.1 + 63204 0.66 0.450149
Target:  5'- --aGCCCGCGCGCgCUCUC-CGCgucgUGCg -3'
miRNA:   3'- augCGGGUGCGCG-GGGGGaGCG----ACGa -5'
6643 5' -65.3 NC_001847.1 + 54299 0.66 0.450149
Target:  5'- cGCGCgCCGcCGCccggaucuGCCCCCCcaagUCGCgGCg -3'
miRNA:   3'- aUGCG-GGU-GCG--------CGGGGGG----AGCGaCGa -5'
6643 5' -65.3 NC_001847.1 + 94972 0.66 0.450149
Target:  5'- -cCGCCgCGCGCaGCCCCCgCggcuuuggCGCaGCUg -3'
miRNA:   3'- auGCGG-GUGCG-CGGGGG-Ga-------GCGaCGA- -5'
6643 5' -65.3 NC_001847.1 + 14901 0.66 0.449271
Target:  5'- -cCGUCCGCGCGCaggccgaCUgCCUCGCcGCg -3'
miRNA:   3'- auGCGGGUGCGCG-------GGgGGAGCGaCGa -5'
6643 5' -65.3 NC_001847.1 + 77157 0.66 0.44577
Target:  5'- cUGCGCcgccaCCGCGCcgguccuGCCUCCCgacgccgcgaccgCGCUGCUg -3'
miRNA:   3'- -AUGCG-----GGUGCG-------CGGGGGGa------------GCGACGA- -5'
6643 5' -65.3 NC_001847.1 + 27060 0.66 0.441416
Target:  5'- gAgGCCCGCa-GCCCCCCggGCgGCa -3'
miRNA:   3'- aUgCGGGUGcgCGGGGGGagCGaCGa -5'
6643 5' -65.3 NC_001847.1 + 106516 0.66 0.441416
Target:  5'- cACGgCCGCGgGCCCCgCggcCGCcGCg -3'
miRNA:   3'- aUGCgGGUGCgCGGGGgGa--GCGaCGa -5'
6643 5' -65.3 NC_001847.1 + 87289 0.66 0.441416
Target:  5'- cGCGCCCGCGCaGCacgcgaCCUC-CUGCg -3'
miRNA:   3'- aUGCGGGUGCG-CGggg---GGAGcGACGa -5'
6643 5' -65.3 NC_001847.1 + 100769 0.66 0.441416
Target:  5'- -uCGCCC-CGCGCCauggCgCUCGCUGg- -3'
miRNA:   3'- auGCGGGuGCGCGGg---GgGAGCGACga -5'
6643 5' -65.3 NC_001847.1 + 132118 0.66 0.441416
Target:  5'- cGCGCagACGUGaCCgCCCCUauugggcggCGCUGCUg -3'
miRNA:   3'- aUGCGggUGCGC-GG-GGGGA---------GCGACGA- -5'
6643 5' -65.3 NC_001847.1 + 32558 0.66 0.441416
Target:  5'- -uCGCCCAgcaggaugGCGCCgCCCgcCGCUGCc -3'
miRNA:   3'- auGCGGGUg-------CGCGGgGGGa-GCGACGa -5'
6643 5' -65.3 NC_001847.1 + 3703 0.66 0.441416
Target:  5'- cACGgCCGCGgGCCCCgCggcCGCcGCg -3'
miRNA:   3'- aUGCgGGUGCgCGGGGgGa--GCGaCGa -5'
6643 5' -65.3 NC_001847.1 + 123830 0.66 0.438815
Target:  5'- -cCGCCCgccggccucggcggGCGCGCCCaUCUUCGC-GCg -3'
miRNA:   3'- auGCGGG--------------UGCGCGGG-GGGAGCGaCGa -5'
6643 5' -65.3 NC_001847.1 + 32861 0.66 0.43278
Target:  5'- gGCGCUCGCGCGCgagaUCCUggCGCUGg- -3'
miRNA:   3'- aUGCGGGUGCGCGg---GGGGa-GCGACga -5'
6643 5' -65.3 NC_001847.1 + 74763 0.66 0.43278
Target:  5'- cGCgGUCgGCGCGCgCCCCCUgGCgaagGUg -3'
miRNA:   3'- aUG-CGGgUGCGCG-GGGGGAgCGa---CGa -5'
6643 5' -65.3 NC_001847.1 + 4975 0.66 0.43278
Target:  5'- gGCGCCCGCGgGgUCgugacgUCCUCGCaGCUg -3'
miRNA:   3'- aUGCGGGUGCgCgGG------GGGAGCGaCGA- -5'
6643 5' -65.3 NC_001847.1 + 29028 0.66 0.43278
Target:  5'- cGCGCCCAgagcCGCGCgCgCCggcagacgUGCUGCa -3'
miRNA:   3'- aUGCGGGU----GCGCGgGgGGa-------GCGACGa -5'
6643 5' -65.3 NC_001847.1 + 10120 0.66 0.43278
Target:  5'- cACGCCCACGgaCGCgUgCUgggaggCGCUGCUg -3'
miRNA:   3'- aUGCGGGUGC--GCGgGgGGa-----GCGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.