miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6644 3' -60.1 NC_001847.1 + 59371 0.66 0.732551
Target:  5'- cGaGcCCGCGGCCGuguucacccGCGCGGCgggCGa- -3'
miRNA:   3'- aC-CaGGCGCUGGU---------CGCGCCGaa-GCac -5'
6644 3' -60.1 NC_001847.1 + 91762 0.66 0.732551
Target:  5'- cGGUCCGCGGgcgcuccgUCGGCGgCGcuggccgcggacGCUUCGUc -3'
miRNA:   3'- aCCAGGCGCU--------GGUCGC-GC------------CGAAGCAc -5'
6644 3' -60.1 NC_001847.1 + 72537 0.66 0.732551
Target:  5'- cGcGUUCGCGGCgAGCGgGGCgaUCGc- -3'
miRNA:   3'- aC-CAGGCGCUGgUCGCgCCGa-AGCac -5'
6644 3' -60.1 NC_001847.1 + 72386 0.66 0.732551
Target:  5'- gUGGUCCuaGCG-CCGGUGCuGGUgUUCGUc -3'
miRNA:   3'- -ACCAGG--CGCuGGUCGCG-CCG-AAGCAc -5'
6644 3' -60.1 NC_001847.1 + 28006 0.66 0.732551
Target:  5'- nGG-CCGCGGCCGaaGCGGCcgUCa-- -3'
miRNA:   3'- aCCaGGCGCUGGUcgCGCCGa-AGcac -5'
6644 3' -60.1 NC_001847.1 + 67183 0.66 0.732551
Target:  5'- cGG-CgGCGACCcccuGcCGCGGCUgugugccgUCGUGc -3'
miRNA:   3'- aCCaGgCGCUGGu---C-GCGCCGA--------AGCAC- -5'
6644 3' -60.1 NC_001847.1 + 122130 0.66 0.732551
Target:  5'- aGGUCgCGaCGGCCGGCGCgcagGGCgccgcgCGg- -3'
miRNA:   3'- aCCAG-GC-GCUGGUCGCG----CCGaa----GCac -5'
6644 3' -60.1 NC_001847.1 + 130819 0.66 0.732551
Target:  5'- nGG-CCGCGGCCGaaGCGGCcgUCa-- -3'
miRNA:   3'- aCCaGGCGCUGGUcgCGCCGa-AGcac -5'
6644 3' -60.1 NC_001847.1 + 58548 0.66 0.722899
Target:  5'- cGGUcuucgCCGCcGCCAGCGgCGGCgaagaUCGg- -3'
miRNA:   3'- aCCA-----GGCGcUGGUCGC-GCCGa----AGCac -5'
6644 3' -60.1 NC_001847.1 + 29249 0.66 0.722899
Target:  5'- aUGGccCCGCGGCCGcGCaCGGaCUaCGUGg -3'
miRNA:   3'- -ACCa-GGCGCUGGU-CGcGCC-GAaGCAC- -5'
6644 3' -60.1 NC_001847.1 + 116978 0.66 0.722899
Target:  5'- gGGcCCGCuggGGCgAGCGUGGCUgaUCGc- -3'
miRNA:   3'- aCCaGGCG---CUGgUCGCGCCGA--AGCac -5'
6644 3' -60.1 NC_001847.1 + 109623 0.66 0.722899
Target:  5'- cGGUgCGCG-CCAacCGCGcCUUCGUGg -3'
miRNA:   3'- aCCAgGCGCuGGUc-GCGCcGAAGCAC- -5'
6644 3' -60.1 NC_001847.1 + 105118 0.66 0.722899
Target:  5'- cGG-CCGCGGCCauAGaCGCGGCcagCGc- -3'
miRNA:   3'- aCCaGGCGCUGG--UC-GCGCCGaa-GCac -5'
6644 3' -60.1 NC_001847.1 + 62117 0.66 0.722899
Target:  5'- -uGUCCGCGGCCGcuGcCGCGGCcUgGUu -3'
miRNA:   3'- acCAGGCGCUGGU--C-GCGCCGaAgCAc -5'
6644 3' -60.1 NC_001847.1 + 73347 0.66 0.722899
Target:  5'- aUGGUguacaCCGCGcguGCCGGCGgGGggUCGg- -3'
miRNA:   3'- -ACCA-----GGCGC---UGGUCGCgCCgaAGCac -5'
6644 3' -60.1 NC_001847.1 + 116173 0.66 0.722899
Target:  5'- cGGgcgCCGCGGCC-GCGCuGGUcgUCGc- -3'
miRNA:   3'- aCCa--GGCGCUGGuCGCG-CCGa-AGCac -5'
6644 3' -60.1 NC_001847.1 + 34595 0.66 0.722899
Target:  5'- aGGcCCGgGcGCUGGCGCGGCggCGc- -3'
miRNA:   3'- aCCaGGCgC-UGGUCGCGCCGaaGCac -5'
6644 3' -60.1 NC_001847.1 + 42973 0.66 0.713172
Target:  5'- cGGgCCGcCGGCCGGCcCGGgUUCGcUGu -3'
miRNA:   3'- aCCaGGC-GCUGGUCGcGCCgAAGC-AC- -5'
6644 3' -60.1 NC_001847.1 + 59651 0.66 0.713172
Target:  5'- aUGG-CCGUGcACCGGCGCcGCcUCGa- -3'
miRNA:   3'- -ACCaGGCGC-UGGUCGCGcCGaAGCac -5'
6644 3' -60.1 NC_001847.1 + 121672 0.66 0.713172
Target:  5'- aGGccaagcCCGCGACCgaaaccccgGGCuCGGCUUCGg- -3'
miRNA:   3'- aCCa-----GGCGCUGG---------UCGcGCCGAAGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.