miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6644 3' -60.1 NC_001847.1 + 134038 0.66 0.703379
Target:  5'- aGG-CCGCGGCggcgccgcccgCGGcCGCGGCgcccggCGUGg -3'
miRNA:   3'- aCCaGGCGCUG-----------GUC-GCGCCGaa----GCAC- -5'
6644 3' -60.1 NC_001847.1 + 62117 0.66 0.722899
Target:  5'- -uGUCCGCGGCCGcuGcCGCGGCcUgGUu -3'
miRNA:   3'- acCAGGCGCUGGU--C-GCGCCGaAgCAc -5'
6644 3' -60.1 NC_001847.1 + 122130 0.66 0.732551
Target:  5'- aGGUCgCGaCGGCCGGCGCgcagGGCgccgcgCGg- -3'
miRNA:   3'- aCCAG-GC-GCUGGUCGCG----CCGaa----GCac -5'
6644 3' -60.1 NC_001847.1 + 93794 0.66 0.713172
Target:  5'- cUGGUUccgCGCGGCC-GCGCGGCcgaGUc -3'
miRNA:   3'- -ACCAG---GCGCUGGuCGCGCCGaagCAc -5'
6644 3' -60.1 NC_001847.1 + 106524 0.66 0.693528
Target:  5'- cGGgccCCGCGGCCGccgcguagcGCGCGGCcgccUCGc- -3'
miRNA:   3'- aCCa--GGCGCUGGU---------CGCGCCGa---AGCac -5'
6644 3' -60.1 NC_001847.1 + 21208 0.66 0.703379
Target:  5'- aGGagacgccgCCGCGACCGcGCGCuGCUUCc-- -3'
miRNA:   3'- aCCa-------GGCGCUGGU-CGCGcCGAAGcac -5'
6644 3' -60.1 NC_001847.1 + 119904 0.66 0.693528
Target:  5'- gUGGccgccgCCGCcGCCGGCGCGuaCUUCGUc -3'
miRNA:   3'- -ACCa-----GGCGcUGGUCGCGCc-GAAGCAc -5'
6644 3' -60.1 NC_001847.1 + 119367 0.66 0.713172
Target:  5'- cUGGUUCuCGAaacUCGGCGCGGCUcgCGg- -3'
miRNA:   3'- -ACCAGGcGCU---GGUCGCGCCGAa-GCac -5'
6644 3' -60.1 NC_001847.1 + 34595 0.66 0.722899
Target:  5'- aGGcCCGgGcGCUGGCGCGGCggCGc- -3'
miRNA:   3'- aCCaGGCgC-UGGUCGCGCCGaaGCac -5'
6644 3' -60.1 NC_001847.1 + 7195 0.66 0.693528
Target:  5'- uUGGagCGCGuCCucgAGCGCGGCUgggcCGUc -3'
miRNA:   3'- -ACCagGCGCuGG---UCGCGCCGAa---GCAc -5'
6644 3' -60.1 NC_001847.1 + 59371 0.66 0.732551
Target:  5'- cGaGcCCGCGGCCGuguucacccGCGCGGCgggCGa- -3'
miRNA:   3'- aC-CaGGCGCUGGU---------CGCGCCGaa-GCac -5'
6644 3' -60.1 NC_001847.1 + 103783 0.66 0.683628
Target:  5'- cGGcaCC-CGGCCGGCGgGGCUUCc-- -3'
miRNA:   3'- aCCa-GGcGCUGGUCGCgCCGAAGcac -5'
6644 3' -60.1 NC_001847.1 + 107843 0.66 0.693528
Target:  5'- gGGgaagCUcggGCGACCGGCgGCGGCUcCGa- -3'
miRNA:   3'- aCCa---GG---CGCUGGUCG-CGCCGAaGCac -5'
6644 3' -60.1 NC_001847.1 + 64110 0.66 0.712196
Target:  5'- cGuGUCCGCGgcGCCAgacgcguGCGCGGCcgcCGUa -3'
miRNA:   3'- aC-CAGGCGC--UGGU-------CGCGCCGaa-GCAc -5'
6644 3' -60.1 NC_001847.1 + 132219 0.66 0.703379
Target:  5'- cGG-CCGCGcuGgCGGCGCGGac-CGUGg -3'
miRNA:   3'- aCCaGGCGC--UgGUCGCGCCgaaGCAC- -5'
6644 3' -60.1 NC_001847.1 + 59940 0.66 0.683628
Target:  5'- aGGgcgCCacgcaaGCGuCCGGCGUGGCgUCGUa -3'
miRNA:   3'- aCCa--GG------CGCuGGUCGCGCCGaAGCAc -5'
6644 3' -60.1 NC_001847.1 + 33665 0.66 0.713172
Target:  5'- gUGG-CCGCGGCCcGCGCGGg------ -3'
miRNA:   3'- -ACCaGGCGCUGGuCGCGCCgaagcac -5'
6644 3' -60.1 NC_001847.1 + 130819 0.66 0.732551
Target:  5'- nGG-CCGCGGCCGaaGCGGCcgUCa-- -3'
miRNA:   3'- aCCaGGCGCUGGUcgCGCCGa-AGcac -5'
6644 3' -60.1 NC_001847.1 + 29249 0.66 0.722899
Target:  5'- aUGGccCCGCGGCCGcGCaCGGaCUaCGUGg -3'
miRNA:   3'- -ACCa-GGCGCUGGU-CGcGCC-GAaGCAC- -5'
6644 3' -60.1 NC_001847.1 + 121672 0.66 0.713172
Target:  5'- aGGccaagcCCGCGACCgaaaccccgGGCuCGGCUUCGg- -3'
miRNA:   3'- aCCa-----GGCGCUGG---------UCGcGCCGAAGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.