Results 21 - 40 of 193 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6644 | 3' | -60.1 | NC_001847.1 | + | 119367 | 0.66 | 0.713172 |
Target: 5'- cUGGUUCuCGAaacUCGGCGCGGCUcgCGg- -3' miRNA: 3'- -ACCAGGcGCU---GGUCGCGCCGAa-GCac -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 93794 | 0.66 | 0.713172 |
Target: 5'- cUGGUUccgCGCGGCC-GCGCGGCcgaGUc -3' miRNA: 3'- -ACCAG---GCGCUGGuCGCGCCGaagCAc -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 121672 | 0.66 | 0.713172 |
Target: 5'- aGGccaagcCCGCGACCgaaaccccgGGCuCGGCUUCGg- -3' miRNA: 3'- aCCa-----GGCGCUGG---------UCGcGCCGAAGCac -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 64110 | 0.66 | 0.712196 |
Target: 5'- cGuGUCCGCGgcGCCAgacgcguGCGCGGCcgcCGUa -3' miRNA: 3'- aC-CAGGCGC--UGGU-------CGCGCCGaa-GCAc -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 82504 | 0.66 | 0.703379 |
Target: 5'- aGGU-CGCGuCUGGCGCGGCgcUCGc- -3' miRNA: 3'- aCCAgGCGCuGGUCGCGCCGa-AGCac -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 134038 | 0.66 | 0.703379 |
Target: 5'- aGG-CCGCGGCggcgccgcccgCGGcCGCGGCgcccggCGUGg -3' miRNA: 3'- aCCaGGCGCUG-----------GUC-GCGCCGaa----GCAC- -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 132219 | 0.66 | 0.703379 |
Target: 5'- cGG-CCGCGcuGgCGGCGCGGac-CGUGg -3' miRNA: 3'- aCCaGGCGC--UgGUCGCGCCgaaGCAC- -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 31225 | 0.66 | 0.703379 |
Target: 5'- aGG-CCGCGGCggcgccgcccgCGGcCGCGGCgcccggCGUGg -3' miRNA: 3'- aCCaGGCGCUG-----------GUC-GCGCCGaa----GCAC- -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 29406 | 0.66 | 0.703379 |
Target: 5'- cGG-CCGCGcuGgCGGCGCGGac-CGUGg -3' miRNA: 3'- aCCaGGCGC--UgGUCGCGCCgaaGCAC- -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 21208 | 0.66 | 0.703379 |
Target: 5'- aGGagacgccgCCGCGACCGcGCGCuGCUUCc-- -3' miRNA: 3'- aCCa-------GGCGCUGGU-CGCGcCGAAGcac -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 29232 | 0.66 | 0.703379 |
Target: 5'- cGGgCCGCGGCCuGC-CGGCcgCGg- -3' miRNA: 3'- aCCaGGCGCUGGuCGcGCCGaaGCac -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 132045 | 0.66 | 0.703379 |
Target: 5'- cGGgCCGCGGCCuGC-CGGCcgCGg- -3' miRNA: 3'- aCCaGGCGCUGGuCGcGCCGaaGCac -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 106524 | 0.66 | 0.693528 |
Target: 5'- cGGgccCCGCGGCCGccgcguagcGCGCGGCcgccUCGc- -3' miRNA: 3'- aCCa--GGCGCUGGU---------CGCGCCGa---AGCac -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 119904 | 0.66 | 0.693528 |
Target: 5'- gUGGccgccgCCGCcGCCGGCGCGuaCUUCGUc -3' miRNA: 3'- -ACCa-----GGCGcUGGUCGCGCc-GAAGCAc -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 107843 | 0.66 | 0.693528 |
Target: 5'- gGGgaagCUcggGCGACCGGCgGCGGCUcCGa- -3' miRNA: 3'- aCCa---GG---CGCUGGUCG-CGCCGAaGCac -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 3711 | 0.66 | 0.693528 |
Target: 5'- cGGgccCCGCGGCCGccgcguagcGCGCGGCcgccUCGc- -3' miRNA: 3'- aCCa--GGCGCUGGU---------CGCGCCGa---AGCac -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 5030 | 0.66 | 0.693528 |
Target: 5'- gGGgaagCUcggGCGACCGGCgGCGGCUcCGa- -3' miRNA: 3'- aCCa---GG---CGCUGGUCG-CGCCGAaGCac -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 71874 | 0.66 | 0.693528 |
Target: 5'- cGG-CCGCGAgC-GCGCGGCccgUUGUu -3' miRNA: 3'- aCCaGGCGCUgGuCGCGCCGa--AGCAc -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 970 | 0.66 | 0.693528 |
Target: 5'- cGGcacCCG-GGCCGGCGgGGCUUCc-- -3' miRNA: 3'- aCCa--GGCgCUGGUCGCgCCGAAGcac -5' |
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6644 | 3' | -60.1 | NC_001847.1 | + | 84001 | 0.66 | 0.693528 |
Target: 5'- gGGUCCaGCG-CCAGCGagagcgugugguUGGCcUCGUa -3' miRNA: 3'- aCCAGG-CGCuGGUCGC------------GCCGaAGCAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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