miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6644 3' -60.1 NC_001847.1 + 596 0.67 0.663714
Target:  5'- cUGGcccUCCGCGGCCGcuccgcagcggcGCGCGGCccgCGc- -3'
miRNA:   3'- -ACC---AGGCGCUGGU------------CGCGCCGaa-GCac -5'
6644 3' -60.1 NC_001847.1 + 769 0.67 0.643702
Target:  5'- cGGcCCGCcGCCGGCGgcgcCGGCcUCGUc -3'
miRNA:   3'- aCCaGGCGcUGGUCGC----GCCGaAGCAc -5'
6644 3' -60.1 NC_001847.1 + 970 0.66 0.693528
Target:  5'- cGGcacCCG-GGCCGGCGgGGCUUCc-- -3'
miRNA:   3'- aCCa--GGCgCUGGUCGCgCCGAAGcac -5'
6644 3' -60.1 NC_001847.1 + 1071 0.69 0.541331
Target:  5'- cUGGUCCGCGucCCAGUccacgccgggcgccGCGGCcgCGg- -3'
miRNA:   3'- -ACCAGGCGCu-GGUCG--------------CGCCGaaGCac -5'
6644 3' -60.1 NC_001847.1 + 2183 0.68 0.603632
Target:  5'- gUGGUCCGCGAgCcGCGCcGCgaccUCGg- -3'
miRNA:   3'- -ACCAGGCGCUgGuCGCGcCGa---AGCac -5'
6644 3' -60.1 NC_001847.1 + 2744 0.67 0.673687
Target:  5'- cGGcCCcCGGcCCGGCGCGGCggCGc- -3'
miRNA:   3'- aCCaGGcGCU-GGUCGCGCCGaaGCac -5'
6644 3' -60.1 NC_001847.1 + 2926 0.79 0.131654
Target:  5'- cGGUCCGCGccGCCAGCGCGGCc----- -3'
miRNA:   3'- aCCAGGCGC--UGGUCGCGCCGaagcac -5'
6644 3' -60.1 NC_001847.1 + 3096 0.67 0.623654
Target:  5'- aGG-CCGCGGCCGGCaggccGCGGCccgccgCGg- -3'
miRNA:   3'- aCCaGGCGCUGGUCG-----CGCCGaa----GCac -5'
6644 3' -60.1 NC_001847.1 + 3526 0.69 0.514301
Target:  5'- cGGgCCGUGGCCgacuacggccgcgAGCGCGGCggCGg- -3'
miRNA:   3'- aCCaGGCGCUGG-------------UCGCGCCGaaGCac -5'
6644 3' -60.1 NC_001847.1 + 3711 0.66 0.693528
Target:  5'- cGGgccCCGCGGCCGccgcguagcGCGCGGCcgccUCGc- -3'
miRNA:   3'- aCCa--GGCGCUGGU---------CGCGCCGa---AGCac -5'
6644 3' -60.1 NC_001847.1 + 3895 0.67 0.673687
Target:  5'- cGGcgCCGCGgcguaGCCAGCGCgGGCgcCGg- -3'
miRNA:   3'- aCCa-GGCGC-----UGGUCGCG-CCGaaGCac -5'
6644 3' -60.1 NC_001847.1 + 3979 0.67 0.623654
Target:  5'- gUGGgCCGUGagcacGCCAGCGCGGCcaaGUu -3'
miRNA:   3'- -ACCaGGCGC-----UGGUCGCGCCGaagCAc -5'
6644 3' -60.1 NC_001847.1 + 4544 0.67 0.643702
Target:  5'- cGGccgcCCGCGGgUGGCGCGGCguggaaGUGg -3'
miRNA:   3'- aCCa---GGCGCUgGUCGCGCCGaag---CAC- -5'
6644 3' -60.1 NC_001847.1 + 4996 0.71 0.398375
Target:  5'- cGG-CCGCGGCaaAGCGCGGCggCGg- -3'
miRNA:   3'- aCCaGGCGCUGg-UCGCGCCGaaGCac -5'
6644 3' -60.1 NC_001847.1 + 5030 0.66 0.693528
Target:  5'- gGGgaagCUcggGCGACCGGCgGCGGCUcCGa- -3'
miRNA:   3'- aCCa---GG---CGCUGGUCG-CGCCGAaGCac -5'
6644 3' -60.1 NC_001847.1 + 5386 0.67 0.653716
Target:  5'- cGGUCCgaGCGGCCGGCGgcacaGGCcgCGc- -3'
miRNA:   3'- aCCAGG--CGCUGGUCGCg----CCGaaGCac -5'
6644 3' -60.1 NC_001847.1 + 6441 0.68 0.58369
Target:  5'- gGGUUagGCGGCgCGGCGaCGGCguaCGUGg -3'
miRNA:   3'- aCCAGg-CGCUG-GUCGC-GCCGaa-GCAC- -5'
6644 3' -60.1 NC_001847.1 + 6816 0.68 0.573766
Target:  5'- -uGUCCGCGugCAGCGCaaaGGUgaCGUc -3'
miRNA:   3'- acCAGGCGCugGUCGCG---CCGaaGCAc -5'
6644 3' -60.1 NC_001847.1 + 7195 0.66 0.693528
Target:  5'- uUGGagCGCGuCCucgAGCGCGGCUgggcCGUc -3'
miRNA:   3'- -ACCagGCGCuGG---UCGCGCCGAa---GCAc -5'
6644 3' -60.1 NC_001847.1 + 9810 0.68 0.613636
Target:  5'- cGG-CCGCuGGCguuCAGCGCGGCUcCGa- -3'
miRNA:   3'- aCCaGGCG-CUG---GUCGCGCCGAaGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.