miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6644 3' -60.1 NC_001847.1 + 87872 0.71 0.423861
Target:  5'- gUGGUCgcUGUGGCC-GCGCGGCUUUcUGg -3'
miRNA:   3'- -ACCAG--GCGCUGGuCGCGCCGAAGcAC- -5'
6644 3' -60.1 NC_001847.1 + 45761 0.73 0.342873
Target:  5'- gGGUCgGCGAUCuuGGCGUGaGCUUCGg- -3'
miRNA:   3'- aCCAGgCGCUGG--UCGCGC-CGAAGCac -5'
6644 3' -60.1 NC_001847.1 + 72119 0.73 0.342873
Target:  5'- gUGGUCC-CGGCCuucgcGCGCGGCg-CGUGc -3'
miRNA:   3'- -ACCAGGcGCUGGu----CGCGCCGaaGCAC- -5'
6644 3' -60.1 NC_001847.1 + 30483 0.73 0.342873
Target:  5'- cUGGgaCGCGAUCGGCGCGGCccUCGg- -3'
miRNA:   3'- -ACCagGCGCUGGUCGCGCCGa-AGCac -5'
6644 3' -60.1 NC_001847.1 + 18955 0.72 0.365962
Target:  5'- gGcGUCCGggcggcgaCGACCAGCGCGGCcgCGg- -3'
miRNA:   3'- aC-CAGGC--------GCUGGUCGCGCCGaaGCac -5'
6644 3' -60.1 NC_001847.1 + 121484 0.71 0.397543
Target:  5'- gUGGUuccacaCCGCGccggagaACCAGCGCGaGCUUCGcUGc -3'
miRNA:   3'- -ACCA------GGCGC-------UGGUCGCGC-CGAAGC-AC- -5'
6644 3' -60.1 NC_001847.1 + 43365 0.71 0.398375
Target:  5'- aGcGUCCGCGGCCAGCGCcGCcgaCGg- -3'
miRNA:   3'- aC-CAGGCGCUGGUCGCGcCGaa-GCac -5'
6644 3' -60.1 NC_001847.1 + 107809 0.71 0.398375
Target:  5'- cGG-CCGCGGCaaAGCGCGGCggCGg- -3'
miRNA:   3'- aCCaGGCGCUGg-UCGCGCCGaaGCac -5'
6644 3' -60.1 NC_001847.1 + 83350 0.71 0.415257
Target:  5'- cUGGUCUGCGACCGggacGCGCGGgg-CGa- -3'
miRNA:   3'- -ACCAGGCGCUGGU----CGCGCCgaaGCac -5'
6644 3' -60.1 NC_001847.1 + 46580 0.73 0.338383
Target:  5'- -aGUCCGCGccgggcgucagccccGCCGGCGCGGCcUCGc- -3'
miRNA:   3'- acCAGGCGC---------------UGGUCGCGCCGaAGCac -5'
6644 3' -60.1 NC_001847.1 + 36958 0.73 0.328074
Target:  5'- cGGgggCUGCGGCCAGCGCgGGCgcCGg- -3'
miRNA:   3'- aCCa--GGCGCUGGUCGCG-CCGaaGCac -5'
6644 3' -60.1 NC_001847.1 + 67636 0.74 0.295849
Target:  5'- cGcGUCCGCGACCgugcccucgucgaggGGCGCGGCggCGc- -3'
miRNA:   3'- aC-CAGGCGCUGG---------------UCGCGCCGaaGCac -5'
6644 3' -60.1 NC_001847.1 + 105739 0.79 0.131654
Target:  5'- cGGUCCGCGccGCCAGCGCGGCc----- -3'
miRNA:   3'- aCCAGGCGC--UGGUCGCGCCGaagcac -5'
6644 3' -60.1 NC_001847.1 + 14060 0.78 0.149365
Target:  5'- aGGUUCGCGGCCGGUGCuugGGCcgcUCGUGg -3'
miRNA:   3'- aCCAGGCGCUGGUCGCG---CCGa--AGCAC- -5'
6644 3' -60.1 NC_001847.1 + 61829 0.78 0.169216
Target:  5'- aGGUCgGCGGCCAGgGUGGUgUCGUa -3'
miRNA:   3'- aCCAGgCGCUGGUCgCGCCGaAGCAc -5'
6644 3' -60.1 NC_001847.1 + 133423 0.78 0.169216
Target:  5'- cUGG-CCGCGGCgCGGCgGCGGCUgaUCGUGc -3'
miRNA:   3'- -ACCaGGCGCUG-GUCG-CGCCGA--AGCAC- -5'
6644 3' -60.1 NC_001847.1 + 71433 0.77 0.177799
Target:  5'- gUGGacuUUCGCGACgGGCGCGGCUUUGa- -3'
miRNA:   3'- -ACC---AGGCGCUGgUCGCGCCGAAGCac -5'
6644 3' -60.1 NC_001847.1 + 80761 0.76 0.200962
Target:  5'- uUGGUCCGCG-CCGGCGCGGac-CGg- -3'
miRNA:   3'- -ACCAGGCGCuGGUCGCGCCgaaGCac -5'
6644 3' -60.1 NC_001847.1 + 118970 0.76 0.205899
Target:  5'- aGGUgcgcuaCGCGACgAGCGCGGCggCGUGc -3'
miRNA:   3'- aCCAg-----GCGCUGgUCGCGCCGaaGCAC- -5'
6644 3' -60.1 NC_001847.1 + 18258 0.75 0.243458
Target:  5'- aUGG-CCGCGACCgcGGCGCGGCUa---- -3'
miRNA:   3'- -ACCaGGCGCUGG--UCGCGCCGAagcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.