miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6644 5' -51.8 NC_001847.1 + 68283 0.68 0.949754
Target:  5'- gUACACGAagcccgagagcGCGUUGGUGA--UCGUGGGc -3'
miRNA:   3'- -GUGUGCU-----------UGCAGUCGCUcaAGCACCU- -5'
6644 5' -51.8 NC_001847.1 + 66546 0.68 0.948454
Target:  5'- cCGCugGAcgcgugcgccuacuGCGgCAGCGuGUUCGUGcGAu -3'
miRNA:   3'- -GUGugCU--------------UGCaGUCGCuCAAGCAC-CU- -5'
6644 5' -51.8 NC_001847.1 + 23452 0.68 0.945332
Target:  5'- gGCGucCGGgguCGUCGGCGAGUUCcuaUGGAa -3'
miRNA:   3'- gUGU--GCUu--GCAGUCGCUCAAGc--ACCU- -5'
6644 5' -51.8 NC_001847.1 + 126265 0.68 0.945332
Target:  5'- gGCGucCGGgguCGUCGGCGAGUUCcuaUGGAa -3'
miRNA:   3'- gUGU--GCUu--GCAGUCGCUCAAGc--ACCU- -5'
6644 5' -51.8 NC_001847.1 + 133821 0.69 0.935741
Target:  5'- gCGCugGGGC-UCGGgGAGccggacUUCGUGGAg -3'
miRNA:   3'- -GUGugCUUGcAGUCgCUC------AAGCACCU- -5'
6644 5' -51.8 NC_001847.1 + 31008 0.69 0.935741
Target:  5'- gCGCugGGGC-UCGGgGAGccggacUUCGUGGAg -3'
miRNA:   3'- -GUGugCUUGcAGUCgCUC------AAGCACCU- -5'
6644 5' -51.8 NC_001847.1 + 89555 0.69 0.935741
Target:  5'- cUACGUGAuCGUCgcgcccGGCGAGggCGUGGAg -3'
miRNA:   3'- -GUGUGCUuGCAG------UCGCUCaaGCACCU- -5'
6644 5' -51.8 NC_001847.1 + 48389 0.69 0.932146
Target:  5'- gCACGCGAACGUCAcgccagcGCGAcacaucgcccuccgcGggccgCGUGGAg -3'
miRNA:   3'- -GUGUGCUUGCAGU-------CGCU---------------Caa---GCACCU- -5'
6644 5' -51.8 NC_001847.1 + 57388 0.69 0.930568
Target:  5'- cUACGCGuACGUgCGGCGGGUcccgcUCGcGGAg -3'
miRNA:   3'- -GUGUGCuUGCA-GUCGCUCA-----AGCaCCU- -5'
6644 5' -51.8 NC_001847.1 + 93209 0.69 0.919464
Target:  5'- aGCGCGAcuGCGaCGGCGAGggCGaGGGc -3'
miRNA:   3'- gUGUGCU--UGCaGUCGCUCaaGCaCCU- -5'
6644 5' -51.8 NC_001847.1 + 113351 0.69 0.919464
Target:  5'- gCGCACGAACGUC-GCGAGgaacUGGc -3'
miRNA:   3'- -GUGUGCUUGCAGuCGCUCaagcACCu -5'
6644 5' -51.8 NC_001847.1 + 32821 0.7 0.907352
Target:  5'- gCGCGCGAGCG-C-GCGAGgcccgCGUGGc -3'
miRNA:   3'- -GUGUGCUUGCaGuCGCUCaa---GCACCu -5'
6644 5' -51.8 NC_001847.1 + 31432 0.7 0.900922
Target:  5'- cCGCgGCGGACGUCgcuGGCGcuGGUgaUCGUGGGc -3'
miRNA:   3'- -GUG-UGCUUGCAG---UCGC--UCA--AGCACCU- -5'
6644 5' -51.8 NC_001847.1 + 109838 0.7 0.887328
Target:  5'- gGCGCGcccuCGUCGGCGAGggcgccaCGUGGu -3'
miRNA:   3'- gUGUGCuu--GCAGUCGCUCaa-----GCACCu -5'
6644 5' -51.8 NC_001847.1 + 40865 0.71 0.865163
Target:  5'- aCGCGCGAACGccggaAGUGAGc-CGUGGAc -3'
miRNA:   3'- -GUGUGCUUGCag---UCGCUCaaGCACCU- -5'
6644 5' -51.8 NC_001847.1 + 69776 0.71 0.857324
Target:  5'- gCGCGCGAAaGUCAGCGGGcUCGUu-- -3'
miRNA:   3'- -GUGUGCUUgCAGUCGCUCaAGCAccu -5'
6644 5' -51.8 NC_001847.1 + 53853 0.72 0.796841
Target:  5'- gGCGCGGGgGUCAGgGGGUgcUGUGGGg -3'
miRNA:   3'- gUGUGCUUgCAGUCgCUCAa-GCACCU- -5'
6644 5' -51.8 NC_001847.1 + 70561 0.73 0.748755
Target:  5'- gAgGCGGACGUgcccguaacguaCGGCGAGUUCGUGa- -3'
miRNA:   3'- gUgUGCUUGCA------------GUCGCUCAAGCACcu -5'
6644 5' -51.8 NC_001847.1 + 35519 0.74 0.728692
Target:  5'- gCGCGcCGAGCGcauccUCGGCGAGgUCGUGGc -3'
miRNA:   3'- -GUGU-GCUUGC-----AGUCGCUCaAGCACCu -5'
6644 5' -51.8 NC_001847.1 + 109450 0.8 0.415696
Target:  5'- --gGCGGcuuACGUCGGCGAGgUCGUGGAu -3'
miRNA:   3'- gugUGCU---UGCAGUCGCUCaAGCACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.