miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6645 3' -55.5 NC_001847.1 + 47376 0.66 0.898647
Target:  5'- cCGGCGgcccgacgAGCUCGAcgaucgccGGCUccgugaGGCCGUGGg -3'
miRNA:   3'- -GCCGUag------UCGAGCU--------UCGA------CCGGUACU- -5'
6645 3' -55.5 NC_001847.1 + 12375 0.66 0.898647
Target:  5'- uCGGCGgcugCGGcCUCGggGCgcgugUGGUCgGUGAc -3'
miRNA:   3'- -GCCGUa---GUC-GAGCuuCG-----ACCGG-UACU- -5'
6645 3' -55.5 NC_001847.1 + 134632 0.66 0.898647
Target:  5'- -aGCGUgGGCUgGggGCgGGCCGg-- -3'
miRNA:   3'- gcCGUAgUCGAgCuuCGaCCGGUacu -5'
6645 3' -55.5 NC_001847.1 + 65654 0.66 0.892618
Target:  5'- aCGGCcgCGuGCgcgcccgcaccaucgCGcAGCUGGCCGUGc -3'
miRNA:   3'- -GCCGuaGU-CGa--------------GCuUCGACCGGUACu -5'
6645 3' -55.5 NC_001847.1 + 33913 0.66 0.891936
Target:  5'- aGGCu---GCUCGGggaGGCUGGCCu--- -3'
miRNA:   3'- gCCGuaguCGAGCU---UCGACCGGuacu -5'
6645 3' -55.5 NC_001847.1 + 86073 0.66 0.891936
Target:  5'- uGGCuuGUCGGCUgcCGccGCccgcGGCCGUGAg -3'
miRNA:   3'- gCCG--UAGUCGA--GCuuCGa---CCGGUACU- -5'
6645 3' -55.5 NC_001847.1 + 79299 0.66 0.884988
Target:  5'- aCGGCGcCGGCUgGcAGCUGcgcGUCAUGGa -3'
miRNA:   3'- -GCCGUaGUCGAgCuUCGAC---CGGUACU- -5'
6645 3' -55.5 NC_001847.1 + 59066 0.66 0.884988
Target:  5'- aGGCggCAGCUCG--GCUGGCgCGc-- -3'
miRNA:   3'- gCCGuaGUCGAGCuuCGACCG-GUacu -5'
6645 3' -55.5 NC_001847.1 + 42910 0.66 0.884988
Target:  5'- -uGCAgCGGCUCGAGagcgcgcgcuGCUGGCCGc-- -3'
miRNA:   3'- gcCGUaGUCGAGCUU----------CGACCGGUacu -5'
6645 3' -55.5 NC_001847.1 + 122625 0.66 0.877806
Target:  5'- gCGGCGUCGucGCcuUCGucGuCUGGCCcgGGu -3'
miRNA:   3'- -GCCGUAGU--CG--AGCuuC-GACCGGuaCU- -5'
6645 3' -55.5 NC_001847.1 + 92614 0.66 0.877076
Target:  5'- gGGCcgCaaagacgAGCUCcucaaGGAGCUGGCCGUu- -3'
miRNA:   3'- gCCGuaG-------UCGAG-----CUUCGACCGGUAcu -5'
6645 3' -55.5 NC_001847.1 + 11169 0.66 0.875607
Target:  5'- cCGGCGUCgggagcuggGGCUgccgcugguccgcgCGggGCUGGUCGagguUGAa -3'
miRNA:   3'- -GCCGUAG---------UCGA--------------GCuuCGACCGGU----ACU- -5'
6645 3' -55.5 NC_001847.1 + 22273 0.66 0.870397
Target:  5'- gCGGCG-CAGCgcgCGcguGUcGGCCGUGAc -3'
miRNA:   3'- -GCCGUaGUCGa--GCuu-CGaCCGGUACU- -5'
6645 3' -55.5 NC_001847.1 + 99543 0.66 0.870397
Target:  5'- gCGGCGUgaugcgCAGCagguucUUGAGGUUGGCCAg-- -3'
miRNA:   3'- -GCCGUA------GUCG------AGCUUCGACCGGUacu -5'
6645 3' -55.5 NC_001847.1 + 79263 0.66 0.870397
Target:  5'- cCGGCGUCGggccGCgcggCGAAGCgGuGCCgGUGAa -3'
miRNA:   3'- -GCCGUAGU----CGa---GCUUCGaC-CGG-UACU- -5'
6645 3' -55.5 NC_001847.1 + 125086 0.66 0.870397
Target:  5'- gCGGCG-CAGCgcgCGcguGUcGGCCGUGAc -3'
miRNA:   3'- -GCCGUaGUCGa--GCuu-CGaCCGGUACU- -5'
6645 3' -55.5 NC_001847.1 + 45849 0.66 0.870397
Target:  5'- gCGGCA-CGGC-CGAGGCcucGGCCGcGGc -3'
miRNA:   3'- -GCCGUaGUCGaGCUUCGa--CCGGUaCU- -5'
6645 3' -55.5 NC_001847.1 + 69473 0.66 0.870397
Target:  5'- gCGGCGg-GGCUCcu-GCUGGCCGg-- -3'
miRNA:   3'- -GCCGUagUCGAGcuuCGACCGGUacu -5'
6645 3' -55.5 NC_001847.1 + 478 0.67 0.862764
Target:  5'- gCGGCAgcagCGGCggcggCGggGC-GGCCGc-- -3'
miRNA:   3'- -GCCGUa---GUCGa----GCuuCGaCCGGUacu -5'
6645 3' -55.5 NC_001847.1 + 13937 0.67 0.862764
Target:  5'- aCGGCGUCAuGCgCGAgcugcGGCUgcGGcCCGUGGg -3'
miRNA:   3'- -GCCGUAGU-CGaGCU-----UCGA--CC-GGUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.