miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6645 3' -55.5 NC_001847.1 + 32494 0.69 0.736679
Target:  5'- cCGGgAUgGuGCUCGAggGGCUGGCCGc-- -3'
miRNA:   3'- -GCCgUAgU-CGAGCU--UCGACCGGUacu -5'
6645 3' -55.5 NC_001847.1 + 70384 0.71 0.633742
Target:  5'- gGGCGcgAGCUCGc-GCUGGCCAaGAu -3'
miRNA:   3'- gCCGUagUCGAGCuuCGACCGGUaCU- -5'
6645 3' -55.5 NC_001847.1 + 52937 0.7 0.654627
Target:  5'- uGGCG-CGGUUCGAccgaGGCcgcggcgucuuUGGCCGUGAa -3'
miRNA:   3'- gCCGUaGUCGAGCU----UCG-----------ACCGGUACU- -5'
6645 3' -55.5 NC_001847.1 + 47235 0.7 0.685793
Target:  5'- aCGGCGUUgAGCUUGuAGCUGGgCAgcuUGAg -3'
miRNA:   3'- -GCCGUAG-UCGAGCuUCGACCgGU---ACU- -5'
6645 3' -55.5 NC_001847.1 + 65109 0.7 0.685793
Target:  5'- gCGaGCcgCGGCUCG--GCUGGCgGUGGg -3'
miRNA:   3'- -GC-CGuaGUCGAGCuuCGACCGgUACU- -5'
6645 3' -55.5 NC_001847.1 + 108138 0.7 0.685793
Target:  5'- uGGCAgaaggcCGGCcggUCGGAGCUGGCUAg-- -3'
miRNA:   3'- gCCGUa-----GUCG---AGCUUCGACCGGUacu -5'
6645 3' -55.5 NC_001847.1 + 3965 0.7 0.706353
Target:  5'- -aGCGcCAGCgCGAGGUgGGCCGUGAg -3'
miRNA:   3'- gcCGUaGUCGaGCUUCGaCCGGUACU- -5'
6645 3' -55.5 NC_001847.1 + 134771 0.7 0.706353
Target:  5'- cCGGCGcgCGGCgcgCGggGCgGGCCccGGg -3'
miRNA:   3'- -GCCGUa-GUCGa--GCuuCGaCCGGuaCU- -5'
6645 3' -55.5 NC_001847.1 + 15942 0.69 0.736679
Target:  5'- uGGCcgCGGCgcCGAcgAGCUcGCCAUGAc -3'
miRNA:   3'- gCCGuaGUCGa-GCU--UCGAcCGGUACU- -5'
6645 3' -55.5 NC_001847.1 + 87345 0.71 0.612851
Target:  5'- cCGGUGUCGGC-CGAGGgcCUGGCCGa-- -3'
miRNA:   3'- -GCCGUAGUCGaGCUUC--GACCGGUacu -5'
6645 3' -55.5 NC_001847.1 + 130818 0.72 0.571311
Target:  5'- gCGGCcgCGGC-CGAAGC-GGCCGUc- -3'
miRNA:   3'- -GCCGuaGUCGaGCUUCGaCCGGUAcu -5'
6645 3' -55.5 NC_001847.1 + 70687 0.72 0.571311
Target:  5'- gGGaCcgCgGGCcCGggGCUGGCCGUGGc -3'
miRNA:   3'- gCC-GuaG-UCGaGCuuCGACCGGUACU- -5'
6645 3' -55.5 NC_001847.1 + 130394 0.76 0.37279
Target:  5'- cCGGCA--GGCUCG-AGCUGGCCAc-- -3'
miRNA:   3'- -GCCGUagUCGAGCuUCGACCGGUacu -5'
6645 3' -55.5 NC_001847.1 + 51186 0.75 0.404391
Target:  5'- cCGGCGacggccuuccuguuUCGgcGCUCGguGCUGGCCGUGGu -3'
miRNA:   3'- -GCCGU--------------AGU--CGAGCuuCGACCGGUACU- -5'
6645 3' -55.5 NC_001847.1 + 58673 0.75 0.415889
Target:  5'- gCGGCGguUgGGCgggCGGcaGGCUGGCCAUGGc -3'
miRNA:   3'- -GCCGU--AgUCGa--GCU--UCGACCGGUACU- -5'
6645 3' -55.5 NC_001847.1 + 67703 0.75 0.424868
Target:  5'- uCGGCGagGuGCUCGAgcgcgccguagcAGCUGGCCAUGc -3'
miRNA:   3'- -GCCGUagU-CGAGCU------------UCGACCGGUACu -5'
6645 3' -55.5 NC_001847.1 + 50146 0.73 0.490764
Target:  5'- gCGGCGgacaCGGCcgugucgaUCGAGGC-GGCCAUGAg -3'
miRNA:   3'- -GCCGUa---GUCG--------AGCUUCGaCCGGUACU- -5'
6645 3' -55.5 NC_001847.1 + 42001 0.73 0.520434
Target:  5'- -uGCGUCGGCgcggaaCGAAGCUGcGCCGUGc -3'
miRNA:   3'- gcCGUAGUCGa-----GCUUCGAC-CGGUACu -5'
6645 3' -55.5 NC_001847.1 + 108170 0.72 0.559993
Target:  5'- cCGGCcgCGGCUgGAugucugucucucuGGCUGGCCGg-- -3'
miRNA:   3'- -GCCGuaGUCGAgCU-------------UCGACCGGUacu -5'
6645 3' -55.5 NC_001847.1 + 125281 0.72 0.56102
Target:  5'- gCGGCAggAGCcgUCGcagguggggcaAGGCUGGCCGUGGc -3'
miRNA:   3'- -GCCGUagUCG--AGC-----------UUCGACCGGUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.