miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6645 5' -59.3 NC_001847.1 + 76392 0.66 0.75641
Target:  5'- cCUCGGGgggggcGCCGggGGCCgCGGCGGGGg -3'
miRNA:   3'- aGGGUCC------CGGCa-UCGGaGCUGUUCCa -5'
6645 5' -59.3 NC_001847.1 + 126440 0.66 0.75641
Target:  5'- gCCCAccaGCCGUGGCCgUCGGCAucGUc -3'
miRNA:   3'- aGGGUcc-CGGCAUCGG-AGCUGUucCA- -5'
6645 5' -59.3 NC_001847.1 + 27417 0.66 0.75641
Target:  5'- gCCCaAGGGuuGUAGCCc---CGGGGUg -3'
miRNA:   3'- aGGG-UCCCggCAUCGGagcuGUUCCA- -5'
6645 5' -59.3 NC_001847.1 + 127366 0.66 0.746892
Target:  5'- --gCGGGGCCcgAGCCUCGGCAccaacggccgucGGGc -3'
miRNA:   3'- aggGUCCCGGcaUCGGAGCUGU------------UCCa -5'
6645 5' -59.3 NC_001847.1 + 34531 0.66 0.746892
Target:  5'- gUCgCCAGGGCCcgAGCCU-GGCcGGGc -3'
miRNA:   3'- -AG-GGUCCCGGcaUCGGAgCUGuUCCa -5'
6645 5' -59.3 NC_001847.1 + 123517 0.66 0.746892
Target:  5'- -gCCAGGGCUGccgcGGgCUCGGCuAAGGc -3'
miRNA:   3'- agGGUCCCGGCa---UCgGAGCUG-UUCCa -5'
6645 5' -59.3 NC_001847.1 + 98666 0.66 0.737275
Target:  5'- -gCCGGGGCCGaAGCCggggcCGAagcCGGGGc -3'
miRNA:   3'- agGGUCCCGGCaUCGGa----GCU---GUUCCa -5'
6645 5' -59.3 NC_001847.1 + 42361 0.66 0.737275
Target:  5'- gUCCuCGGuGGCCagcGCCUCGGgGGGGa -3'
miRNA:   3'- -AGG-GUC-CCGGcauCGGAGCUgUUCCa -5'
6645 5' -59.3 NC_001847.1 + 109431 0.66 0.737275
Target:  5'- gUCCUucucGGGCCGcaguggcGGCUuacgUCGGCGAGGUc -3'
miRNA:   3'- -AGGGu---CCCGGCa------UCGG----AGCUGUUCCA- -5'
6645 5' -59.3 NC_001847.1 + 30163 0.66 0.736308
Target:  5'- gCCCuGGGUgCGUGGCgCUCGGCGGaccuggccgacgcGGUg -3'
miRNA:   3'- aGGGuCCCG-GCAUCG-GAGCUGUU-------------CCA- -5'
6645 5' -59.3 NC_001847.1 + 98869 0.66 0.727569
Target:  5'- aUCCCggaAGGGCgCGUGcGCCUgGGCGgcccAGGc -3'
miRNA:   3'- -AGGG---UCCCG-GCAU-CGGAgCUGU----UCCa -5'
6645 5' -59.3 NC_001847.1 + 96239 0.66 0.727569
Target:  5'- -gUCAGGGCCGgagucagGGCCggcggCGGCAAuGGc -3'
miRNA:   3'- agGGUCCCGGCa------UCGGa----GCUGUU-CCa -5'
6645 5' -59.3 NC_001847.1 + 63553 0.66 0.717782
Target:  5'- -gCCuGGGCCGgcGCCgggCGGCAcuGUg -3'
miRNA:   3'- agGGuCCCGGCauCGGa--GCUGUucCA- -5'
6645 5' -59.3 NC_001847.1 + 127335 0.66 0.717782
Target:  5'- gCCgAGGcgGCCGgcuGCCgCGGCAGGGg -3'
miRNA:   3'- aGGgUCC--CGGCau-CGGaGCUGUUCCa -5'
6645 5' -59.3 NC_001847.1 + 104586 0.66 0.717782
Target:  5'- gUCCCAGacGCCGcggAGCCgcgCGACGAGc- -3'
miRNA:   3'- -AGGGUCc-CGGCa--UCGGa--GCUGUUCca -5'
6645 5' -59.3 NC_001847.1 + 122576 0.66 0.717782
Target:  5'- cUCUAGGuGCgCGUAgGCCUCGucuggcACAAGGUc -3'
miRNA:   3'- aGGGUCC-CG-GCAU-CGGAGC------UGUUCCA- -5'
6645 5' -59.3 NC_001847.1 + 75143 0.66 0.707924
Target:  5'- -gCCGGGGCCGgcgguGCuCUCGGuuAGGUu -3'
miRNA:   3'- agGGUCCCGGCau---CG-GAGCUguUCCA- -5'
6645 5' -59.3 NC_001847.1 + 135126 0.67 0.698002
Target:  5'- cCCCGGGGUCGcagggGGCCcgcgCGGCGcGGc -3'
miRNA:   3'- aGGGUCCCGGCa----UCGGa---GCUGUuCCa -5'
6645 5' -59.3 NC_001847.1 + 32313 0.67 0.698002
Target:  5'- cCCCGGGGUCGcagggGGCCcgcgCGGCGcGGc -3'
miRNA:   3'- aGGGUCCCGGCa----UCGGa---GCUGUuCCa -5'
6645 5' -59.3 NC_001847.1 + 115111 0.67 0.698002
Target:  5'- gCCCAGGGCgGcGGCC---GCAGGGc -3'
miRNA:   3'- aGGGUCCCGgCaUCGGagcUGUUCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.