miRNA display CGI


Results 21 - 40 of 516 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6646 3' -62.2 NC_001847.1 + 123692 0.66 0.628473
Target:  5'- cGCGCacgguAGCCgCugGcGCGGGgucGCACGg -3'
miRNA:   3'- aCGCGc----UCGGgGugCuCGCCC---UGUGC- -5'
6646 3' -62.2 NC_001847.1 + 119010 0.66 0.628473
Target:  5'- gGCGCuGAucGCagaCCCGCaGGUGGGGCGCa -3'
miRNA:   3'- aCGCG-CU--CG---GGGUGcUCGCCCUGUGc -5'
6646 3' -62.2 NC_001847.1 + 12431 0.66 0.628473
Target:  5'- aGUGCGGGCUCCAa-GGCGccGGCACa -3'
miRNA:   3'- aCGCGCUCGGGGUgcUCGCc-CUGUGc -5'
6646 3' -62.2 NC_001847.1 + 104245 0.66 0.628473
Target:  5'- gUGCGCGGGCCCa--GGcGCGuGGcCACc -3'
miRNA:   3'- -ACGCGCUCGGGgugCU-CGC-CCuGUGc -5'
6646 3' -62.2 NC_001847.1 + 119510 0.66 0.628473
Target:  5'- aGCcCGAGCCCgGagGGGCGGcGGcCGCGg -3'
miRNA:   3'- aCGcGCUCGGGgUg-CUCGCC-CU-GUGC- -5'
6646 3' -62.2 NC_001847.1 + 4626 0.66 0.628473
Target:  5'- gGCGCGGGCggCCCGCcGGCGcucGCGCGc -3'
miRNA:   3'- aCGCGCUCG--GGGUGcUCGCcc-UGUGC- -5'
6646 3' -62.2 NC_001847.1 + 1432 0.66 0.628473
Target:  5'- gUGCGCGGGCCCa--GGcGCGuGGcCACc -3'
miRNA:   3'- -ACGCGCUCGGGgugCU-CGC-CCuGUGc -5'
6646 3' -62.2 NC_001847.1 + 50015 0.66 0.625514
Target:  5'- -aUGUGuGCUUCACGGucuuugaccagcccGCGGGGCGCGg -3'
miRNA:   3'- acGCGCuCGGGGUGCU--------------CGCCCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 86998 0.66 0.622557
Target:  5'- cGCGCGccGGCCcggcgguuaccugggCCGCGccucGCGGGACAg- -3'
miRNA:   3'- aCGCGC--UCGG---------------GGUGCu---CGCCCUGUgc -5'
6646 3' -62.2 NC_001847.1 + 57909 0.66 0.6196
Target:  5'- cGCGCGAccgcgccaaguccggGCCCgGCGGcccgcggcuccgucGCGGGcagcaGCGCGg -3'
miRNA:   3'- aCGCGCU---------------CGGGgUGCU--------------CGCCC-----UGUGC- -5'
6646 3' -62.2 NC_001847.1 + 100941 0.66 0.618614
Target:  5'- gGUGCugguAGCCgCCGCGguaacAGCGGGGCuCGg -3'
miRNA:   3'- aCGCGc---UCGG-GGUGC-----UCGCCCUGuGC- -5'
6646 3' -62.2 NC_001847.1 + 59745 0.66 0.618614
Target:  5'- gGCGCGAGCUCgACucGCuGGcCGCGu -3'
miRNA:   3'- aCGCGCUCGGGgUGcuCGcCCuGUGC- -5'
6646 3' -62.2 NC_001847.1 + 133481 0.66 0.618614
Target:  5'- cGCGCGAcgGCCCgGCcgucGGGCaGGcGCACGu -3'
miRNA:   3'- aCGCGCU--CGGGgUG----CUCGcCC-UGUGC- -5'
6646 3' -62.2 NC_001847.1 + 58026 0.66 0.618614
Target:  5'- cGCGCGccuugaagcAGCCCCgccgcuaccGCGcGCGGGcCGCc -3'
miRNA:   3'- aCGCGC---------UCGGGG---------UGCuCGCCCuGUGc -5'
6646 3' -62.2 NC_001847.1 + 105001 0.66 0.618614
Target:  5'- -cCGCGAGCCgcgCCGCGAccuCGGGGCGg- -3'
miRNA:   3'- acGCGCUCGG---GGUGCUc--GCCCUGUgc -5'
6646 3' -62.2 NC_001847.1 + 1 0.66 0.618614
Target:  5'- gGC-CcAGcCCCCGCGcGgGGGGCGCGg -3'
miRNA:   3'- aCGcGcUC-GGGGUGCuCgCCCUGUGC- -5'
6646 3' -62.2 NC_001847.1 + 104166 0.66 0.618614
Target:  5'- cUGCGCGGccauguccuugcGCCCguCGAGCGccGGcaGCACGc -3'
miRNA:   3'- -ACGCGCU------------CGGGguGCUCGC--CC--UGUGC- -5'
6646 3' -62.2 NC_001847.1 + 2188 0.66 0.618614
Target:  5'- -cCGCGAGCCgcgCCGCGAccuCGGGGCGg- -3'
miRNA:   3'- acGCGCUCGG---GGUGCUc--GCCCUGUgc -5'
6646 3' -62.2 NC_001847.1 + 13004 0.66 0.618614
Target:  5'- cGCGCGGcGCCCUGCGcGCcGGccguCGCGa -3'
miRNA:   3'- aCGCGCU-CGGGGUGCuCGcCCu---GUGC- -5'
6646 3' -62.2 NC_001847.1 + 15562 0.66 0.618614
Target:  5'- gGCGCGGGggaacCCCCAUcGGCGGcAgGCGg -3'
miRNA:   3'- aCGCGCUC-----GGGGUGcUCGCCcUgUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.