miRNA display CGI


Results 21 - 40 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6646 5' -51.3 NC_001847.1 + 116370 0.66 0.983428
Target:  5'- uGCGUGgugcuGgCGCGCUaCCGCGAg -3'
miRNA:   3'- uCGUAUauaauCgGCGUGA-GGCGCUg -5'
6646 5' -51.3 NC_001847.1 + 46221 0.66 0.983428
Target:  5'- cGCAUGgcgcagAGCCGCGCg-CGCG-Ca -3'
miRNA:   3'- uCGUAUauaa--UCGGCGUGagGCGCuG- -5'
6646 5' -51.3 NC_001847.1 + 82826 0.66 0.983428
Target:  5'- cAGCGUGUuucccgGUUGGCgccgccCGCGC-CCGCGGu -3'
miRNA:   3'- -UCGUAUA------UAAUCG------GCGUGaGGCGCUg -5'
6646 5' -51.3 NC_001847.1 + 102854 0.66 0.983428
Target:  5'- cGGCGUcgcggGGCCGCGC-CaCGCgGACg -3'
miRNA:   3'- -UCGUAuauaaUCGGCGUGaG-GCG-CUG- -5'
6646 5' -51.3 NC_001847.1 + 32836 0.66 0.983428
Target:  5'- aGGCccgcg-UGGCCGC-CgagaCCGCGGCg -3'
miRNA:   3'- -UCGuauauaAUCGGCGuGa---GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 35537 0.66 0.983428
Target:  5'- cGGCGagGUcgUGGCugccgaggcggCGCGCgaCCGCGACg -3'
miRNA:   3'- -UCGUa-UAuaAUCG-----------GCGUGa-GGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 121524 0.66 0.983428
Target:  5'- uGCGUGUGUcccgcgAGCUGCGUUCCGgGGa -3'
miRNA:   3'- uCGUAUAUAa-----UCGGCGUGAGGCgCUg -5'
6646 5' -51.3 NC_001847.1 + 103307 0.66 0.983228
Target:  5'- cGGCGg--GgcGGCCGCGCgccaaccccccugUCCGCGGa -3'
miRNA:   3'- -UCGUauaUaaUCGGCGUG-------------AGGCGCUg -5'
6646 5' -51.3 NC_001847.1 + 494 0.66 0.983228
Target:  5'- cGGCGg--GgcGGCCGCGCgccaaccccccugUCCGCGGa -3'
miRNA:   3'- -UCGUauaUaaUCGGCGUG-------------AGGCGCUg -5'
6646 5' -51.3 NC_001847.1 + 36118 0.66 0.981561
Target:  5'- gGGCGccuuccacgaAGCCGCGCgcgCCGCgGACg -3'
miRNA:   3'- -UCGUauauaa----UCGGCGUGa--GGCG-CUG- -5'
6646 5' -51.3 NC_001847.1 + 14301 0.66 0.981344
Target:  5'- uGGCGUGgcc-GGCCGC-CUCuCGgGGCc -3'
miRNA:   3'- -UCGUAUauaaUCGGCGuGAG-GCgCUG- -5'
6646 5' -51.3 NC_001847.1 + 27863 0.66 0.981344
Target:  5'- gGGCcc-UGUgGGCCGCGCUCgaGCGGu -3'
miRNA:   3'- -UCGuauAUAaUCGGCGUGAGg-CGCUg -5'
6646 5' -51.3 NC_001847.1 + 27556 0.66 0.981344
Target:  5'- cGGCGgcUGggAGCCGCA-UCCGCa-- -3'
miRNA:   3'- -UCGUauAUaaUCGGCGUgAGGCGcug -5'
6646 5' -51.3 NC_001847.1 + 87010 0.66 0.980458
Target:  5'- cGGCGguuaccugGGCCGCGCcUCGCGGg -3'
miRNA:   3'- -UCGUauauaa--UCGGCGUGaGGCGCUg -5'
6646 5' -51.3 NC_001847.1 + 106314 0.66 0.97907
Target:  5'- cGCGUucUAgcAGCCGCACcaCCGCGcCu -3'
miRNA:   3'- uCGUAu-AUaaUCGGCGUGa-GGCGCuG- -5'
6646 5' -51.3 NC_001847.1 + 13975 0.66 0.97907
Target:  5'- cGCAUGUc---G-CGCACgUCCGCGGCu -3'
miRNA:   3'- uCGUAUAuaauCgGCGUG-AGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 105858 0.66 0.97907
Target:  5'- cGGCGgcccggAGCaCGCGCUCCGgGuGCg -3'
miRNA:   3'- -UCGUauauaaUCG-GCGUGAGGCgC-UG- -5'
6646 5' -51.3 NC_001847.1 + 95130 0.66 0.97907
Target:  5'- cGCcgAcuUUAucGCCGUGCUgCGCGACg -3'
miRNA:   3'- uCGuaUauAAU--CGGCGUGAgGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 18593 0.66 0.97907
Target:  5'- uGCGcc-AUUAGCgCGCcgUCCGCGGCg -3'
miRNA:   3'- uCGUauaUAAUCG-GCGugAGGCGCUG- -5'
6646 5' -51.3 NC_001847.1 + 3045 0.66 0.97907
Target:  5'- cGGCGgcccggAGCaCGCGCUCCGgGuGCg -3'
miRNA:   3'- -UCGUauauaaUCG-GCGUGAGGCgC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.