miRNA display CGI


Results 1 - 20 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6647 3' -64.9 NC_001847.1 + 133296 0.66 0.493013
Target:  5'- --cGCUCCGGCGCaGaGuGCgUGCCGCUg -3'
miRNA:   3'- gcaCGAGGUCGUG-C-C-CGgGCGGCGGu -5'
6647 3' -64.9 NC_001847.1 + 83086 0.66 0.493013
Target:  5'- gGUGCccgcccacaccUCCGG-GCGGGCCU-CCGCCu -3'
miRNA:   3'- gCACG-----------AGGUCgUGCCCGGGcGGCGGu -5'
6647 3' -64.9 NC_001847.1 + 11334 0.66 0.493013
Target:  5'- -----gCCAGgACGGcGCCUGCCGCUg -3'
miRNA:   3'- gcacgaGGUCgUGCC-CGGGCGGCGGu -5'
6647 3' -64.9 NC_001847.1 + 107152 0.66 0.493013
Target:  5'- gCGcGCUgCAGCGCGGcccaGCgCGgCGCCAc -3'
miRNA:   3'- -GCaCGAgGUCGUGCC----CGgGCgGCGGU- -5'
6647 3' -64.9 NC_001847.1 + 70171 0.66 0.493013
Target:  5'- aGUGCUCCGGgcCGCuGGCCaGCaCGUCGu -3'
miRNA:   3'- gCACGAGGUC--GUGcCCGGgCG-GCGGU- -5'
6647 3' -64.9 NC_001847.1 + 49889 0.66 0.493013
Target:  5'- -cUGCUgCaCGGCACgugcuGGGCCCGgCCGCg- -3'
miRNA:   3'- gcACGA-G-GUCGUG-----CCCGGGC-GGCGgu -5'
6647 3' -64.9 NC_001847.1 + 45436 0.66 0.493013
Target:  5'- uGUGUUgaggggcaCGGCAUGGGCCCG-CGCa- -3'
miRNA:   3'- gCACGAg-------GUCGUGCCCGGGCgGCGgu -5'
6647 3' -64.9 NC_001847.1 + 1945 0.66 0.493013
Target:  5'- uCGgGCcgCCGGCGCucguccucgccGGGCggCGCCGCCAg -3'
miRNA:   3'- -GCaCGa-GGUCGUG-----------CCCGg-GCGGCGGU- -5'
6647 3' -64.9 NC_001847.1 + 48761 0.66 0.493013
Target:  5'- cCGUcGCgUCCAucGCcacaauccGCGGGCaCCGCCGCa- -3'
miRNA:   3'- -GCA-CG-AGGU--CG--------UGCCCG-GGCGGCGgu -5'
6647 3' -64.9 NC_001847.1 + 38086 0.66 0.493013
Target:  5'- aCGUGCUCCGGgACuuGCCCaGCCugacGCUAg -3'
miRNA:   3'- -GCACGAGGUCgUGccCGGG-CGG----CGGU- -5'
6647 3' -64.9 NC_001847.1 + 66324 0.66 0.4921
Target:  5'- gCG-GCgCCcugcggcggguggGGCGCGGGCgCCGCCGUg- -3'
miRNA:   3'- -GCaCGaGG-------------UCGUGCCCG-GGCGGCGgu -5'
6647 3' -64.9 NC_001847.1 + 102061 0.66 0.489363
Target:  5'- gCGUGUUCggcagcaagggcaGGCGCGGGCCgCGCgCGaCCc -3'
miRNA:   3'- -GCACGAGg------------UCGUGCCCGG-GCG-GC-GGu -5'
6647 3' -64.9 NC_001847.1 + 96526 0.66 0.487544
Target:  5'- cCGUGgUCCAGUACGGcgcgucaggcgacgcGCgCGCucaaCGCCAg -3'
miRNA:   3'- -GCACgAGGUCGUGCC---------------CGgGCG----GCGGU- -5'
6647 3' -64.9 NC_001847.1 + 104221 0.66 0.483914
Target:  5'- uCGcGCggCGGCACGGGCaCCGCgGUg- -3'
miRNA:   3'- -GCaCGagGUCGUGCCCG-GGCGgCGgu -5'
6647 3' -64.9 NC_001847.1 + 29981 0.66 0.483914
Target:  5'- aCGcgGCcgggCCGGCgcgGCGGGagCCGCCGCUg -3'
miRNA:   3'- -GCa-CGa---GGUCG---UGCCCg-GGCGGCGGu -5'
6647 3' -64.9 NC_001847.1 + 76449 0.66 0.483914
Target:  5'- gGUGgaugCCAGCGCcauGGccaGCCUGCCGCCc -3'
miRNA:   3'- gCACga--GGUCGUG---CC---CGGGCGGCGGu -5'
6647 3' -64.9 NC_001847.1 + 71183 0.66 0.483914
Target:  5'- gGUGUcgCgCAGCGCcGGCgCCGgCGCCAu -3'
miRNA:   3'- gCACGa-G-GUCGUGcCCG-GGCgGCGGU- -5'
6647 3' -64.9 NC_001847.1 + 1408 0.66 0.483914
Target:  5'- uCGcGCggCGGCACGGGCaCCGCgGUg- -3'
miRNA:   3'- -GCaCGagGUCGUGCCCG-GGCGgCGgu -5'
6647 3' -64.9 NC_001847.1 + 42978 0.66 0.483914
Target:  5'- --cGCcggCCGGCcCGGGUUCGCUGUCGg -3'
miRNA:   3'- gcaCGa--GGUCGuGCCCGGGCGGCGGU- -5'
6647 3' -64.9 NC_001847.1 + 45261 0.66 0.483914
Target:  5'- cCG-GCgUgAGCGCGGcgaaGCCCGCCGCg- -3'
miRNA:   3'- -GCaCGaGgUCGUGCC----CGGGCGGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.