miRNA display CGI


Results 1 - 20 of 444 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6647 3' -64.9 NC_001847.1 + 96381 1.07 0.000554
Target:  5'- uCGUGCUCCAGCACGGGCCCGCCGCCAc -3'
miRNA:   3'- -GCACGAGGUCGUGCCCGGGCGGCGGU- -5'
6647 3' -64.9 NC_001847.1 + 98161 0.8 0.051777
Target:  5'- --cGCU-CGGCGCGGGCCCGCuCGCCGg -3'
miRNA:   3'- gcaCGAgGUCGUGCCCGGGCG-GCGGU- -5'
6647 3' -64.9 NC_001847.1 + 52410 0.8 0.051777
Target:  5'- cCGUGCUCCAgGCGCuGGGCCCGCgCGUgGa -3'
miRNA:   3'- -GCACGAGGU-CGUG-CCCGGGCG-GCGgU- -5'
6647 3' -64.9 NC_001847.1 + 82723 0.8 0.053132
Target:  5'- uGUGCUCCAcGCGCGGGCCCaG-CGCCu -3'
miRNA:   3'- gCACGAGGU-CGUGCCCGGG-CgGCGGu -5'
6647 3' -64.9 NC_001847.1 + 18914 0.79 0.061854
Target:  5'- aCGUGCUCCuGCGCGGGagcaggcCCCGuuGCCu -3'
miRNA:   3'- -GCACGAGGuCGUGCCC-------GGGCggCGGu -5'
6647 3' -64.9 NC_001847.1 + 134261 0.79 0.06528
Target:  5'- gCGgcgGCcCCGGCGCGGG-CCGCCGCCGc -3'
miRNA:   3'- -GCa--CGaGGUCGUGCCCgGGCGGCGGU- -5'
6647 3' -64.9 NC_001847.1 + 31448 0.79 0.06528
Target:  5'- gCGgcgGCcCCGGCGCGGG-CCGCCGCCGc -3'
miRNA:   3'- -GCa--CGaGGUCGUGCCCgGGCGGCGGU- -5'
6647 3' -64.9 NC_001847.1 + 90838 0.78 0.076109
Target:  5'- --cGCUCUGGCGCuGGCCCGCCGCg- -3'
miRNA:   3'- gcaCGAGGUCGUGcCCGGGCGGCGgu -5'
6647 3' -64.9 NC_001847.1 + 87496 0.78 0.078073
Target:  5'- cCGUGCUCgGcggcugcuuGCACGuGCCCGCCGCCGc -3'
miRNA:   3'- -GCACGAGgU---------CGUGCcCGGGCGGCGGU- -5'
6647 3' -64.9 NC_001847.1 + 45503 0.78 0.080087
Target:  5'- --cGC-CCGGgGCGGGCgCCGCCGCCGg -3'
miRNA:   3'- gcaCGaGGUCgUGCCCG-GGCGGCGGU- -5'
6647 3' -64.9 NC_001847.1 + 125062 0.77 0.093246
Target:  5'- uGUGCUCCcgcgcgcggcggGGCGCuGGGCCCGCgCgGCCAa -3'
miRNA:   3'- gCACGAGG------------UCGUG-CCCGGGCG-G-CGGU- -5'
6647 3' -64.9 NC_001847.1 + 63226 0.77 0.098071
Target:  5'- gCGUGCgcgcgCCGcGCGcCGGGUCCGCCGCUg -3'
miRNA:   3'- -GCACGa----GGU-CGU-GCCCGGGCGGCGGu -5'
6647 3' -64.9 NC_001847.1 + 18501 0.76 0.108708
Target:  5'- gCGUGCccgcggcugccgaggCCAGCgcuGCGGGCgCGCCGCCGu -3'
miRNA:   3'- -GCACGa--------------GGUCG---UGCCCGgGCGGCGGU- -5'
6647 3' -64.9 NC_001847.1 + 73197 0.76 0.113997
Target:  5'- uCG-GC-CC-GCGCGGGCCgCGCCGCCGc -3'
miRNA:   3'- -GCaCGaGGuCGUGCCCGG-GCGGCGGU- -5'
6647 3' -64.9 NC_001847.1 + 80537 0.76 0.113997
Target:  5'- aCGUcgGCaUCGGCGCGGGCgCgCGCCGCCAg -3'
miRNA:   3'- -GCA--CGaGGUCGUGCCCG-G-GCGGCGGU- -5'
6647 3' -64.9 NC_001847.1 + 29347 0.75 0.116876
Target:  5'- gCG-GCUCCAGCGCGcGGCCCcggcggcgcuGCgCGCCGa -3'
miRNA:   3'- -GCaCGAGGUCGUGC-CCGGG----------CG-GCGGU- -5'
6647 3' -64.9 NC_001847.1 + 132160 0.75 0.116876
Target:  5'- gCG-GCUCCAGCGCGcGGCCCcggcggcgcuGCgCGCCGa -3'
miRNA:   3'- -GCaCGAGGUCGUGC-CCGGG----------CG-GCGGU- -5'
6647 3' -64.9 NC_001847.1 + 65618 0.75 0.116876
Target:  5'- gCGUGCUgcUCGGCGCaGGGCUuggcugCGCCGCCAa -3'
miRNA:   3'- -GCACGA--GGUCGUG-CCCGG------GCGGCGGU- -5'
6647 3' -64.9 NC_001847.1 + 21766 0.75 0.119823
Target:  5'- --gGCcgCCGGCGcCGGGCCCGgCGCCGg -3'
miRNA:   3'- gcaCGa-GGUCGU-GCCCGGGCgGCGGU- -5'
6647 3' -64.9 NC_001847.1 + 124579 0.75 0.119823
Target:  5'- --gGCcgCCGGCGcCGGGCCCGgCGCCGg -3'
miRNA:   3'- gcaCGa-GGUCGU-GCCCGGGCgGCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.