miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6647 5' -54.5 NC_001847.1 + 88047 0.66 0.932936
Target:  5'- uUCGGC-GCuGGUCgGAAaGCUGUUCu -3'
miRNA:   3'- cAGCUGaCGcCCAGgCUUaUGACGAG- -5'
6647 5' -54.5 NC_001847.1 + 6751 0.66 0.92766
Target:  5'- cGUCGuCUGCGgugcggccGGUgCGAGgcgccaGCUGCUCc -3'
miRNA:   3'- -CAGCuGACGC--------CCAgGCUUa-----UGACGAG- -5'
6647 5' -54.5 NC_001847.1 + 68 0.66 0.910336
Target:  5'- uUCGGCgcgGCGGGcCCGG--GCccGCUCu -3'
miRNA:   3'- cAGCUGa--CGCCCaGGCUuaUGa-CGAG- -5'
6647 5' -54.5 NC_001847.1 + 102881 0.66 0.910336
Target:  5'- uUCGGCgcgGCGGGcCCGG--GCccGCUCu -3'
miRNA:   3'- cAGCUGa--CGCCCaGGCUuaUGa-CGAG- -5'
6647 5' -54.5 NC_001847.1 + 97044 0.66 0.910336
Target:  5'- --gGGCaGCGGcGUCCGG--GCUGCUUu -3'
miRNA:   3'- cagCUGaCGCC-CAGGCUuaUGACGAG- -5'
6647 5' -54.5 NC_001847.1 + 22165 0.67 0.904066
Target:  5'- -cCGGCgcaGCGGG-CCGGc--CUGCUCg -3'
miRNA:   3'- caGCUGa--CGCCCaGGCUuauGACGAG- -5'
6647 5' -54.5 NC_001847.1 + 124978 0.67 0.904066
Target:  5'- -cCGGCgcaGCGGG-CCGGc--CUGCUCg -3'
miRNA:   3'- caGCUGa--CGCCCaGGCUuauGACGAG- -5'
6647 5' -54.5 NC_001847.1 + 116811 0.67 0.904066
Target:  5'- -gCGACUGCGc--CCGGcaGCUGCUCc -3'
miRNA:   3'- caGCUGACGCccaGGCUuaUGACGAG- -5'
6647 5' -54.5 NC_001847.1 + 15512 0.67 0.904066
Target:  5'- aGUCGAUgcggcucgGCGGGagCCGcggGCUGCUg -3'
miRNA:   3'- -CAGCUGa-------CGCCCa-GGCuuaUGACGAg -5'
6647 5' -54.5 NC_001847.1 + 122651 0.67 0.903426
Target:  5'- -cCGGCUGCGGccUCCGGgcuuuacgucuuuGUGCUGCa- -3'
miRNA:   3'- caGCUGACGCCc-AGGCU-------------UAUGACGag -5'
6647 5' -54.5 NC_001847.1 + 100521 0.67 0.897552
Target:  5'- gGUgGGCUGCGGGUCgCGGAgugGgUGggCg -3'
miRNA:   3'- -CAgCUGACGCCCAG-GCUUa--UgACgaG- -5'
6647 5' -54.5 NC_001847.1 + 95355 0.67 0.893528
Target:  5'- gGUCGACUgGCGGGggCUGGcgGCggaccgcgccgccgGCUCu -3'
miRNA:   3'- -CAGCUGA-CGCCCa-GGCUuaUGa-------------CGAG- -5'
6647 5' -54.5 NC_001847.1 + 118120 0.67 0.890797
Target:  5'- -cCGcCaGCGGGcCCGAAUcGCUGCUg -3'
miRNA:   3'- caGCuGaCGCCCaGGCUUA-UGACGAg -5'
6647 5' -54.5 NC_001847.1 + 44097 0.67 0.890797
Target:  5'- -gCGugUGCGGccuuuGUCCGAGacgccgggcaGCUGCUCc -3'
miRNA:   3'- caGCugACGCC-----CAGGCUUa---------UGACGAG- -5'
6647 5' -54.5 NC_001847.1 + 125469 0.67 0.876579
Target:  5'- gGUCGGCggcagcucgcgGCGGG-CgCGAGgacgcccgGCUGCUCg -3'
miRNA:   3'- -CAGCUGa----------CGCCCaG-GCUUa-------UGACGAG- -5'
6647 5' -54.5 NC_001847.1 + 116015 0.68 0.853559
Target:  5'- cGUCGuCUGCGGuGUgCCGGugcACUGCg- -3'
miRNA:   3'- -CAGCuGACGCC-CA-GGCUua-UGACGag -5'
6647 5' -54.5 NC_001847.1 + 134459 0.68 0.845459
Target:  5'- -aCGAguCUGUGcgaacacacgcGGUCCGAGUGCgGCUCu -3'
miRNA:   3'- caGCU--GACGC-----------CCAGGCUUAUGaCGAG- -5'
6647 5' -54.5 NC_001847.1 + 31646 0.68 0.845459
Target:  5'- -aCGAguCUGUGcgaacacacgcGGUCCGAGUGCgGCUCu -3'
miRNA:   3'- caGCU--GACGC-----------CCAGGCUUAUGaCGAG- -5'
6647 5' -54.5 NC_001847.1 + 130985 0.68 0.828658
Target:  5'- --gGACaGCGGGcCCGAggACUGCa- -3'
miRNA:   3'- cagCUGaCGCCCaGGCUuaUGACGag -5'
6647 5' -54.5 NC_001847.1 + 28172 0.68 0.828658
Target:  5'- --gGACaGCGGGcCCGAggACUGCa- -3'
miRNA:   3'- cagCUGaCGCCCaGGCUuaUGACGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.