Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6647 | 5' | -54.5 | NC_001847.1 | + | 127989 | 0.69 | 0.792887 |
Target: 5'- -aCGGCUGCgcgaucGGGUuuUCGcuGAUGCUGCUCa -3' miRNA: 3'- caGCUGACG------CCCA--GGC--UUAUGACGAG- -5' |
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6647 | 5' | -54.5 | NC_001847.1 | + | 88449 | 0.73 | 0.61089 |
Target: 5'- cGUgGGCcGCGGGccCCGAccgcgcgcgcGUGCUGCUCg -3' miRNA: 3'- -CAgCUGaCGCCCa-GGCU----------UAUGACGAG- -5' |
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6647 | 5' | -54.5 | NC_001847.1 | + | 12611 | 0.74 | 0.538642 |
Target: 5'- -gCGACcgGCaGGGUCCGGGcggcACUGCUCg -3' miRNA: 3'- caGCUGa-CG-CCCAGGCUUa---UGACGAG- -5' |
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6647 | 5' | -54.5 | NC_001847.1 | + | 77659 | 0.75 | 0.479142 |
Target: 5'- uUCGAC-GCGGGcgCCGAGgUACUGCUg -3' miRNA: 3'- cAGCUGaCGCCCa-GGCUU-AUGACGAg -5' |
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6647 | 5' | -54.5 | NC_001847.1 | + | 96418 | 1.1 | 0.002699 |
Target: 5'- aGUCGACUGCGGGUCCGAAUACUGCUCg -3' miRNA: 3'- -CAGCUGACGCCCAGGCUUAUGACGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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