miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 3' -62.8 NC_001847.1 + 125061 0.66 0.598931
Target:  5'- -uUGUGCUcccGCGCgCGGCGGGGCGc -3'
miRNA:   3'- gcACACGGaccCGCGgGCCGCUCUGU- -5'
6648 3' -62.8 NC_001847.1 + 58899 0.66 0.598931
Target:  5'- gGUGcGCCUccauGGCGUCgGGuCGGGACGa -3'
miRNA:   3'- gCACaCGGAc---CCGCGGgCC-GCUCUGU- -5'
6648 3' -62.8 NC_001847.1 + 88247 0.66 0.598931
Target:  5'- cCGgcgcgGCgCgGGGCGCCgGGCGGGgACGg -3'
miRNA:   3'- -GCaca--CG-GaCCCGCGGgCCGCUC-UGU- -5'
6648 3' -62.8 NC_001847.1 + 44244 0.66 0.589121
Target:  5'- gCGUGgGgCUGaGCGCgCCGGCGAcugGGCAa -3'
miRNA:   3'- -GCACaCgGACcCGCG-GGCCGCU---CUGU- -5'
6648 3' -62.8 NC_001847.1 + 125436 0.66 0.589121
Target:  5'- aGUG-GCCgcgcagGGcGCGUCCGGgGAGGg- -3'
miRNA:   3'- gCACaCGGa-----CC-CGCGGGCCgCUCUgu -5'
6648 3' -62.8 NC_001847.1 + 22623 0.66 0.589121
Target:  5'- aGUG-GCCgcgcagGGcGCGUCCGGgGAGGg- -3'
miRNA:   3'- gCACaCGGa-----CC-CGCGGGCCgCUCUgu -5'
6648 3' -62.8 NC_001847.1 + 130171 0.66 0.589121
Target:  5'- aCGUcaGCgaccccgcGGGCGCCCGGCcugaaGAGACGg -3'
miRNA:   3'- -GCAcaCGga------CCCGCGGGCCG-----CUCUGU- -5'
6648 3' -62.8 NC_001847.1 + 56866 0.66 0.588141
Target:  5'- cCGgcgGCCcGGGCGCggccacgggcccgCCGGCGAcGGCGa -3'
miRNA:   3'- -GCacaCGGaCCCGCG-------------GGCCGCU-CUGU- -5'
6648 3' -62.8 NC_001847.1 + 30339 0.66 0.58227
Target:  5'- gGUGcucuacgacccgcUGCCcgGGGaggcgcuggcggcgcCGCCCGGCGAGgACGa -3'
miRNA:   3'- gCAC-------------ACGGa-CCC---------------GCGGGCCGCUC-UGU- -5'
6648 3' -62.8 NC_001847.1 + 133152 0.66 0.58227
Target:  5'- gGUGcucuacgacccgcUGCCcgGGGaggcgcuggcggcgcCGCCCGGCGAGgACGa -3'
miRNA:   3'- gCAC-------------ACGGa-CCC---------------GCGGGCCGCUC-UGU- -5'
6648 3' -62.8 NC_001847.1 + 13914 0.66 0.579339
Target:  5'- gGUG-GCUgGGGCGCUCGGUGccGCGc -3'
miRNA:   3'- gCACaCGGaCCCGCGGGCCGCucUGU- -5'
6648 3' -62.8 NC_001847.1 + 60860 0.66 0.579339
Target:  5'- ----cGCCaGGGCGUCCaGcGCGGGGCGg -3'
miRNA:   3'- gcacaCGGaCCCGCGGG-C-CGCUCUGU- -5'
6648 3' -62.8 NC_001847.1 + 70704 0.66 0.569593
Target:  5'- gCGgcgGCggGGGCGCCCgcGGCGAGcGCGa -3'
miRNA:   3'- -GCacaCGgaCCCGCGGG--CCGCUC-UGU- -5'
6648 3' -62.8 NC_001847.1 + 91022 0.66 0.559887
Target:  5'- --cGUGCCggcGGaGCagcuGCCCGGCGucucGGACAa -3'
miRNA:   3'- gcaCACGGa--CC-CG----CGGGCCGC----UCUGU- -5'
6648 3' -62.8 NC_001847.1 + 5218 0.66 0.559887
Target:  5'- ----cGCC-GcGGCGgCCGGCGGGGCGc -3'
miRNA:   3'- gcacaCGGaC-CCGCgGGCCGCUCUGU- -5'
6648 3' -62.8 NC_001847.1 + 83613 0.66 0.559887
Target:  5'- ----cGCCUGGGCGCCgcccccgccugcCGGCGccGCAc -3'
miRNA:   3'- gcacaCGGACCCGCGG------------GCCGCucUGU- -5'
6648 3' -62.8 NC_001847.1 + 108031 0.66 0.559887
Target:  5'- ----cGCC-GcGGCGgCCGGCGGGGCGc -3'
miRNA:   3'- gcacaCGGaC-CCGCgGGCCGCUCUGU- -5'
6648 3' -62.8 NC_001847.1 + 78288 0.66 0.550229
Target:  5'- ----cGCCcGGGcCGCCgGGCGcAGACGg -3'
miRNA:   3'- gcacaCGGaCCC-GCGGgCCGC-UCUGU- -5'
6648 3' -62.8 NC_001847.1 + 29190 0.66 0.550228
Target:  5'- aCGUGcUGCCguugcugGGGCuGCCCgacGGCGGGcuggaGCAg -3'
miRNA:   3'- -GCAC-ACGGa------CCCG-CGGG---CCGCUC-----UGU- -5'
6648 3' -62.8 NC_001847.1 + 21504 0.66 0.550228
Target:  5'- ---uUGCCgGGcGCGCCuCGGCGGGGg- -3'
miRNA:   3'- gcacACGGaCC-CGCGG-GCCGCUCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.