miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 54509 0.66 0.947674
Target:  5'- gGCCGgggugggggGCGGUGgggcGgGGCCguccgGGGGCGCa -3'
miRNA:   3'- -UGGUaa-------UGCCACa---UgCCGG-----UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 7695 0.66 0.947674
Target:  5'- -aCGUUGCGGUGcuggaGCGcGCCuuGGGCAUu -3'
miRNA:   3'- ugGUAAUGCCACa----UGC-CGGu-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 34130 0.66 0.947674
Target:  5'- cGCCugccGCGGUGgccgccGCGGCgAGcGCGCu -3'
miRNA:   3'- -UGGuaa-UGCCACa-----UGCCGgUCuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 71015 0.66 0.947674
Target:  5'- uUCGUU-CGGc--GCGGCCAuGGGCACg -3'
miRNA:   3'- uGGUAAuGCCacaUGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 30711 0.66 0.947674
Target:  5'- cGCC---GCGGUGcugccGCGGCgCAGuGCGCc -3'
miRNA:   3'- -UGGuaaUGCCACa----UGCCG-GUCuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 47818 0.66 0.947674
Target:  5'- cACCGgggACGGgaugccgGCGGCCAauGCGCg -3'
miRNA:   3'- -UGGUaa-UGCCaca----UGCCGGUcuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 72710 0.66 0.947674
Target:  5'- gGCCGcc-CGGUGgGCGGCagCAG-GCACg -3'
miRNA:   3'- -UGGUaauGCCACaUGCCG--GUCuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 44022 0.66 0.947674
Target:  5'- gGCC---GCGuGUGUGCGGgCuuguGGGCGCu -3'
miRNA:   3'- -UGGuaaUGC-CACAUGCCgGu---CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 133524 0.66 0.947674
Target:  5'- cGCC---GCGGUGcugccGCGGCgCAGuGCGCc -3'
miRNA:   3'- -UGGuaaUGCCACa----UGCCG-GUCuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 32162 0.66 0.947674
Target:  5'- cGCCGcgACGGcGUGCGcGgCGGAGCu- -3'
miRNA:   3'- -UGGUaaUGCCaCAUGC-CgGUCUCGug -5'
6648 5' -53.9 NC_001847.1 + 16008 0.66 0.944974
Target:  5'- gGCUcgcacuCGGUGUacuccauguaguacaGCGGCCGG-GCGCa -3'
miRNA:   3'- -UGGuaau--GCCACA---------------UGCCGGUCuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 110421 0.66 0.943124
Target:  5'- gGCCuUUACGGccgaGUACGaGCgacuGGAGCGCg -3'
miRNA:   3'- -UGGuAAUGCCa---CAUGC-CGg---UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 131947 0.66 0.943124
Target:  5'- cGCCGgcgaugGCGGcGacgGCGGCgAGAGCGg -3'
miRNA:   3'- -UGGUaa----UGCCaCa--UGCCGgUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 88094 0.66 0.943124
Target:  5'- aGCUGUcgGCGGUGgcgcgGCuGGCCGGAaucacggugucGCGCg -3'
miRNA:   3'- -UGGUAa-UGCCACa----UG-CCGGUCU-----------CGUG- -5'
6648 5' -53.9 NC_001847.1 + 123041 0.66 0.943124
Target:  5'- gGCCGc--UGGaaGUACGGCCGcGGGCGCc -3'
miRNA:   3'- -UGGUaauGCCa-CAUGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 20326 0.66 0.943124
Target:  5'- cGCCG--AgGGaccaUGUACcGCCAGGGCACc -3'
miRNA:   3'- -UGGUaaUgCC----ACAUGcCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 3809 0.66 0.943124
Target:  5'- uGCCGgcACGGggcGU-CGGCCGcGAGCGu -3'
miRNA:   3'- -UGGUaaUGCCa--CAuGCCGGU-CUCGUg -5'
6648 5' -53.9 NC_001847.1 + 94464 0.66 0.942655
Target:  5'- -gCGUUGCGGUGUuuauuguGCGGCaa-AGUACa -3'
miRNA:   3'- ugGUAAUGCCACA-------UGCCGgucUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 3967 0.66 0.938323
Target:  5'- cGCCAgcGCGaG-GUG-GGCCGuGAGCACg -3'
miRNA:   3'- -UGGUaaUGC-CaCAUgCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 134236 0.66 0.938323
Target:  5'- cGCCG--GCGGgcgGCGGCCGGcGGcCGCg -3'
miRNA:   3'- -UGGUaaUGCCacaUGCCGGUC-UC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.