miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 132596 0.66 0.938323
Target:  5'- gGCCGcccCGGcccgGCGGCgGGAGCGCc -3'
miRNA:   3'- -UGGUaauGCCaca-UGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 99799 0.66 0.938323
Target:  5'- cGCCuguggUGCGGgGUcggaGCGGCCGGGGgcCGCu -3'
miRNA:   3'- -UGGua---AUGCCaCA----UGCCGGUCUC--GUG- -5'
6648 5' -53.9 NC_001847.1 + 71015 0.66 0.947674
Target:  5'- uUCGUU-CGGc--GCGGCCAuGGGCACg -3'
miRNA:   3'- uGGUAAuGCCacaUGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 31692 0.66 0.93327
Target:  5'- gGCCGUgucUGCGcUGUACGGCgC-GAGCGa -3'
miRNA:   3'- -UGGUA---AUGCcACAUGCCG-GuCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 92200 0.66 0.93327
Target:  5'- cCCGcgcGCGGcGUcggccgcuuggGCGGCCAGcAGCGCg -3'
miRNA:   3'- uGGUaa-UGCCaCA-----------UGCCGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 3967 0.66 0.938323
Target:  5'- cGCCAgcGCGaG-GUG-GGCCGuGAGCACg -3'
miRNA:   3'- -UGGUaaUGC-CaCAUgCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 7695 0.66 0.947674
Target:  5'- -aCGUUGCGGUGcuggaGCGcGCCuuGGGCAUu -3'
miRNA:   3'- ugGUAAUGCCACa----UGC-CGGu-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 134236 0.66 0.938323
Target:  5'- cGCCG--GCGGgcgGCGGCCGGcGGcCGCg -3'
miRNA:   3'- -UGGUaaUGCCacaUGCCGGUC-UC-GUG- -5'
6648 5' -53.9 NC_001847.1 + 85783 0.66 0.938323
Target:  5'- gGCCGaUGCGGUGcGCGuCgAGGGUGCg -3'
miRNA:   3'- -UGGUaAUGCCACaUGCcGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 72710 0.66 0.947674
Target:  5'- gGCCGcc-CGGUGgGCGGCagCAG-GCACg -3'
miRNA:   3'- -UGGUaauGCCACaUGCCG--GUCuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 3809 0.66 0.943124
Target:  5'- uGCCGgcACGGggcGU-CGGCCGcGAGCGu -3'
miRNA:   3'- -UGGUaaUGCCa--CAuGCCGGU-CUCGUg -5'
6648 5' -53.9 NC_001847.1 + 83059 0.66 0.93327
Target:  5'- gGCC---GCGGc--GCGGCCgaAGAGCGCa -3'
miRNA:   3'- -UGGuaaUGCCacaUGCCGG--UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 54413 0.66 0.922402
Target:  5'- cGCCGccGCGGuUGgccucgGCGGCCcGGGCAg -3'
miRNA:   3'- -UGGUaaUGCC-ACa-----UGCCGGuCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 6741 0.66 0.926871
Target:  5'- -aCAUaGCGGgcgucgucugcgGUGCGGCCGGuGCGa -3'
miRNA:   3'- ugGUAaUGCCa-----------CAUGCCGGUCuCGUg -5'
6648 5' -53.9 NC_001847.1 + 59239 0.66 0.922402
Target:  5'- gGCCGUcgGCGaUGgcgcCGGCCAGGGC-Ca -3'
miRNA:   3'- -UGGUAa-UGCcACau--GCCGGUCUCGuG- -5'
6648 5' -53.9 NC_001847.1 + 80692 0.66 0.922402
Target:  5'- cGCCGgcgGCGGc-UGCGGCUGGAagaaGCACa -3'
miRNA:   3'- -UGGUaa-UGCCacAUGCCGGUCU----CGUG- -5'
6648 5' -53.9 NC_001847.1 + 50157 0.66 0.927963
Target:  5'- gGCCGUgucgauCGag--GCGGCCAuGAGCACg -3'
miRNA:   3'- -UGGUAau----GCcacaUGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 105916 0.66 0.93327
Target:  5'- gGCCGgcaggccGCGGcccgccGCGGCCgAGAGCACc -3'
miRNA:   3'- -UGGUaa-----UGCCaca---UGCCGG-UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 27912 0.66 0.927963
Target:  5'- gGCCGcgcUUGCGGa----GGCCAGGGCGg -3'
miRNA:   3'- -UGGU---AAUGCCacaugCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 59856 0.66 0.927963
Target:  5'- gGCCAggcGCGGUcgccgAgGGCCGGcGCGCg -3'
miRNA:   3'- -UGGUaa-UGCCAca---UgCCGGUCuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.