Results 61 - 80 of 122 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 46318 | 0.67 | 0.916588 |
Target: 5'- gUCGUUACGGUGgccGCGaccGCCAG-GCAa -3' miRNA: 3'- uGGUAAUGCCACa--UGC---CGGUCuCGUg -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 29353 | 0.67 | 0.895618 |
Target: 5'- gGCCGUUgaaaacaGCGGcgaccgcgcgGCGGCCGGAGCu- -3' miRNA: 3'- -UGGUAA-------UGCCaca-------UGCCGGUCUCGug -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 104880 | 0.67 | 0.890824 |
Target: 5'- cGCCGcaGCGGUG-GCGGC--GAGCGCc -3' miRNA: 3'- -UGGUaaUGCCACaUGCCGguCUCGUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 36951 | 0.67 | 0.890824 |
Target: 5'- gGCCGa-GCGGggGcUGCGGCCAGcgcgGGCGCc -3' miRNA: 3'- -UGGUaaUGCCa-C-AUGCCGGUC----UCGUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 13803 | 0.67 | 0.890824 |
Target: 5'- aGCCGgcgcaGCGGUGUACgggGGCCGGcgugugacgguGCGCg -3' miRNA: 3'- -UGGUaa---UGCCACAUG---CCGGUCu----------CGUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 115763 | 0.67 | 0.901606 |
Target: 5'- aGCCG--ACGGggagccggcuCGGCCAGAGCGu -3' miRNA: 3'- -UGGUaaUGCCacau------GCCGGUCUCGUg -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 133967 | 0.67 | 0.910521 |
Target: 5'- gGCCGcgGCGGUGgccuucugcGCGGCCgcgcugccGGAGcCGCg -3' miRNA: 3'- -UGGUaaUGCCACa--------UGCCGG--------UCUC-GUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 57980 | 0.67 | 0.916588 |
Target: 5'- cGCuCGUgucaGCGGUcGaGCGGCaAGAGCACa -3' miRNA: 3'- -UG-GUAa---UGCCA-CaUGCCGgUCUCGUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 3528 | 0.67 | 0.890824 |
Target: 5'- gGCCGUgGCcGacUACGGCCGcGAGCGCg -3' miRNA: 3'- -UGGUAaUGcCacAUGCCGGU-CUCGUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 2067 | 0.67 | 0.890824 |
Target: 5'- cGCCGcaGCGGUG-GCGGC--GAGCGCc -3' miRNA: 3'- -UGGUaaUGCCACaUGCCGguCUCGUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 31154 | 0.67 | 0.910521 |
Target: 5'- gGCCGcgGCGGUGgccuucugcGCGGCCgcgcugccGGAGcCGCg -3' miRNA: 3'- -UGGUaaUGCCACa--------UGCCGG--------UCUC-GUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 125438 | 0.67 | 0.897636 |
Target: 5'- gACCc--GCGcGUGgcUGGCCGGAGgACg -3' miRNA: 3'- -UGGuaaUGC-CACauGCCGGUCUCgUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 3944 | 0.67 | 0.908024 |
Target: 5'- cGCCGcgGCGGgggGggcgccgucuccgGCGGCgAGGGCGCc -3' miRNA: 3'- -UGGUaaUGCCa--Ca------------UGCCGgUCUCGUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 65496 | 0.67 | 0.910521 |
Target: 5'- uCCAUggcGCGGUGUGgGGC-GGcGCGCg -3' miRNA: 3'- uGGUAa--UGCCACAUgCCGgUCuCGUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 122356 | 0.67 | 0.916588 |
Target: 5'- gAUCGUUggGCGGcGUGCGGCac-AGCGCg -3' miRNA: 3'- -UGGUAA--UGCCaCAUGCCGgucUCGUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 72710 | 0.66 | 0.947674 |
Target: 5'- gGCCGcc-CGGUGgGCGGCagCAG-GCACg -3' miRNA: 3'- -UGGUaauGCCACaUGCCG--GUCuCGUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 134236 | 0.66 | 0.938323 |
Target: 5'- cGCCG--GCGGgcgGCGGCCGGcGGcCGCg -3' miRNA: 3'- -UGGUaaUGCCacaUGCCGGUC-UC-GUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 3809 | 0.66 | 0.943124 |
Target: 5'- uGCCGgcACGGggcGU-CGGCCGcGAGCGu -3' miRNA: 3'- -UGGUaaUGCCa--CAuGCCGGU-CUCGUg -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 7695 | 0.66 | 0.947674 |
Target: 5'- -aCGUUGCGGUGcuggaGCGcGCCuuGGGCAUu -3' miRNA: 3'- ugGUAAUGCCACa----UGC-CGGu-CUCGUG- -5' |
|||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 34130 | 0.66 | 0.947674 |
Target: 5'- cGCCugccGCGGUGgccgccGCGGCgAGcGCGCu -3' miRNA: 3'- -UGGuaa-UGCCACa-----UGCCGgUCuCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home