miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 96613 1.1 0.003024
Target:  5'- cACCAUUACGGUGUACGGCCAGAGCACa -3'
miRNA:   3'- -UGGUAAUGCCACAUGCCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 32985 0.79 0.319701
Target:  5'- cGCCGggGCGGgcaggGCGGCCGGAGCGg -3'
miRNA:   3'- -UGGUaaUGCCaca--UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 71860 0.78 0.358923
Target:  5'- cCCA--GCGGUGgaaGCGGCCGcGAGCGCg -3'
miRNA:   3'- uGGUaaUGCCACa--UGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 43223 0.77 0.410259
Target:  5'- cGCCGUUGCccGGUG-GCGGUgGGGGCGCg -3'
miRNA:   3'- -UGGUAAUG--CCACaUGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 31806 0.75 0.484348
Target:  5'- gGCCGUgGCGGUGgGCGGCgcgggggCAGAGUGCg -3'
miRNA:   3'- -UGGUAaUGCCACaUGCCG-------GUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 17462 0.74 0.555972
Target:  5'- -----cGCGGUcGUACaGGCCGGGGCGCa -3'
miRNA:   3'- ugguaaUGCCA-CAUG-CCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 107031 0.73 0.608207
Target:  5'- gGCCAUgaaaucgGCGGUGUcgcgcGCGGCCccGGGCAg -3'
miRNA:   3'- -UGGUAa------UGCCACA-----UGCCGGu-CUCGUg -5'
6648 5' -53.9 NC_001847.1 + 106713 0.73 0.629287
Target:  5'- uCCAguugGCGGcGUGC-GCCAGGGCGCu -3'
miRNA:   3'- uGGUaa--UGCCaCAUGcCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 13101 0.73 0.629287
Target:  5'- uGCCAUUuuu-UGUcGCGGCCGGGGCGCg -3'
miRNA:   3'- -UGGUAAugccACA-UGCCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 31194 0.73 0.633506
Target:  5'- cGCCAUcgACGGUGcucucgcugagggcGCGGCguGGGCGCg -3'
miRNA:   3'- -UGGUAa-UGCCACa-------------UGCCGguCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 27968 0.72 0.639835
Target:  5'- cGCgGUcGCGGUGgaggcggccGCGGCCGGGGCGg -3'
miRNA:   3'- -UGgUAaUGCCACa--------UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 130781 0.72 0.639835
Target:  5'- cGCgGUcGCGGUGgaggcggccGCGGCCGGGGCGg -3'
miRNA:   3'- -UGgUAaUGCCACa--------UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 70693 0.72 0.650376
Target:  5'- cGCCGccGCGGgcgGCGGCgGGGGCGCc -3'
miRNA:   3'- -UGGUaaUGCCacaUGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 17265 0.72 0.660902
Target:  5'- aGCCGUUGCGGaaccaGUGCaGGCgCguGGAGCGCg -3'
miRNA:   3'- -UGGUAAUGCCa----CAUG-CCG-G--UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 11877 0.72 0.671403
Target:  5'- uGCUAccACGGUGUaaucugguGCGGCCGGGGUccGCg -3'
miRNA:   3'- -UGGUaaUGCCACA--------UGCCGGUCUCG--UG- -5'
6648 5' -53.9 NC_001847.1 + 122916 0.72 0.671403
Target:  5'- cGCCGUUcgGGUGUGCGcgcgccgcgcaaGCCAGaAGCGCa -3'
miRNA:   3'- -UGGUAAugCCACAUGC------------CGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 61816 0.72 0.671403
Target:  5'- cACCAUUGCcaacaGGUcgGCGGCCAGGGUg- -3'
miRNA:   3'- -UGGUAAUG-----CCAcaUGCCGGUCUCGug -5'
6648 5' -53.9 NC_001847.1 + 68976 0.72 0.671403
Target:  5'- gGCCcgcGCGG-GcACGGCCgAGAGCACg -3'
miRNA:   3'- -UGGuaaUGCCaCaUGCCGG-UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 59539 0.72 0.681871
Target:  5'- cGCuCAUggcagGCGGUGgggGCGGCgGGGGCGg -3'
miRNA:   3'- -UG-GUAa----UGCCACa--UGCCGgUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 76411 0.71 0.712973
Target:  5'- gGCCGcgGCGGgggcaccccGCGGCgGGAGCGCg -3'
miRNA:   3'- -UGGUaaUGCCaca------UGCCGgUCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.