miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 92480 0.71 0.723208
Target:  5'- gGCCAgcGCGGcg-GCGGCCucuucgacaaAGGGCACg -3'
miRNA:   3'- -UGGUaaUGCCacaUGCCGG----------UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 17454 0.71 0.733359
Target:  5'- cGCCcu--CGGUG-GCGGCCgucagGGAGCGCa -3'
miRNA:   3'- -UGGuaauGCCACaUGCCGG-----UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 121671 0.71 0.733359
Target:  5'- cGCCGcUGUGGgGUGCGGCCcGAGCAg -3'
miRNA:   3'- -UGGUaAUGCCaCAUGCCGGuCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 97201 0.71 0.743417
Target:  5'- uACCggUGCGGU-UGCucGCCGGGGCGCg -3'
miRNA:   3'- -UGGuaAUGCCAcAUGc-CGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 90863 0.7 0.753372
Target:  5'- gGCCGggGCuGGUGUcgaGGCCGGGGC-Cg -3'
miRNA:   3'- -UGGUaaUG-CCACAug-CCGGUCUCGuG- -5'
6648 5' -53.9 NC_001847.1 + 30060 0.7 0.753372
Target:  5'- uGCCGgcGCGGUGgcGCGGCUGGgAGUGCu -3'
miRNA:   3'- -UGGUaaUGCCACa-UGCCGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 7738 0.7 0.753372
Target:  5'- cGCgGgcGCGGaGgcgGCGGCCAGGGCAa -3'
miRNA:   3'- -UGgUaaUGCCaCa--UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 28814 0.7 0.763213
Target:  5'- cGCCGUUcacgcaggcGCGGUgGUGCGGCUgcuAGAacGCGCg -3'
miRNA:   3'- -UGGUAA---------UGCCA-CAUGCCGG---UCU--CGUG- -5'
6648 5' -53.9 NC_001847.1 + 100814 0.7 0.791955
Target:  5'- uGCCAUUGCGGccgaccuCGGCCcGGGCGg -3'
miRNA:   3'- -UGGUAAUGCCacau---GCCGGuCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 37584 0.7 0.791955
Target:  5'- gGCCGcUGCGGcUGcgGCGGCCGGGggccggcccGCGCu -3'
miRNA:   3'- -UGGUaAUGCC-ACa-UGCCGGUCU---------CGUG- -5'
6648 5' -53.9 NC_001847.1 + 123615 0.7 0.791955
Target:  5'- aGCCAagGCGGcaaacuCGGCCGGGGCGg -3'
miRNA:   3'- -UGGUaaUGCCacau--GCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 62526 0.7 0.791955
Target:  5'- gGCacggGCGGcacgugccGUGCGGCCAGcAGCGCg -3'
miRNA:   3'- -UGguaaUGCCa-------CAUGCCGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 97526 0.69 0.810368
Target:  5'- uGCaCGcUAUGGUGUACuuGGCCAGcguGCGCu -3'
miRNA:   3'- -UG-GUaAUGCCACAUG--CCGGUCu--CGUG- -5'
6648 5' -53.9 NC_001847.1 + 7254 0.69 0.810368
Target:  5'- gGCUG-UGCGG-GcGCGGCgGGGGCACg -3'
miRNA:   3'- -UGGUaAUGCCaCaUGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 134129 0.69 0.819321
Target:  5'- cGCC---GCGGgcgGCGGCCugguGGAGCGCg -3'
miRNA:   3'- -UGGuaaUGCCacaUGCCGG----UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 18205 0.69 0.819321
Target:  5'- cGCCAggcagcggUACGGgcUGUGCGGCUcucGGCGCg -3'
miRNA:   3'- -UGGUa-------AUGCC--ACAUGCCGGuc-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 110563 0.69 0.819321
Target:  5'- cGCCAUUACcacaUGgacACGGCCGGGGaCGCg -3'
miRNA:   3'- -UGGUAAUGcc--ACa--UGCCGGUCUC-GUG- -5'
6648 5' -53.9 NC_001847.1 + 99373 0.69 0.819321
Target:  5'- cGCCGUUaGCGG-GUGCGaGUCgaugauAGAGCGCg -3'
miRNA:   3'- -UGGUAA-UGCCaCAUGC-CGG------UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 31316 0.69 0.819321
Target:  5'- cGCC---GCGGgcgGCGGCCugguGGAGCGCg -3'
miRNA:   3'- -UGGuaaUGCCacaUGCCGG----UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 75442 0.69 0.821972
Target:  5'- gGCgAgcGCGGUGUucccgcuGCcgaccgggggggaggGGCCAGAGCGCa -3'
miRNA:   3'- -UGgUaaUGCCACA-------UG---------------CCGGUCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.