Results 21 - 40 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 134236 | 0.66 | 0.938323 |
Target: 5'- cGCCG--GCGGgcgGCGGCCGGcGGcCGCg -3' miRNA: 3'- -UGGUaaUGCCacaUGCCGGUC-UC-GUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 132596 | 0.66 | 0.938323 |
Target: 5'- gGCCGcccCGGcccgGCGGCgGGAGCGCc -3' miRNA: 3'- -UGGUaauGCCaca-UGCCGgUCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 85783 | 0.66 | 0.938323 |
Target: 5'- gGCCGaUGCGGUGcGCGuCgAGGGUGCg -3' miRNA: 3'- -UGGUaAUGCCACaUGCcGgUCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 3967 | 0.66 | 0.938323 |
Target: 5'- cGCCAgcGCGaG-GUG-GGCCGuGAGCACg -3' miRNA: 3'- -UGGUaaUGC-CaCAUgCCGGU-CUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 125230 | 0.66 | 0.938323 |
Target: 5'- cGCCugc-CGGgcguacucgGCGGCCAcGAGCGCg -3' miRNA: 3'- -UGGuaauGCCaca------UGCCGGU-CUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 54764 | 0.66 | 0.938323 |
Target: 5'- cGCCAccagACGGUcGUcccaGGCguGGGCACg -3' miRNA: 3'- -UGGUaa--UGCCA-CAug--CCGguCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 29783 | 0.66 | 0.938323 |
Target: 5'- gGCCGcccCGGcccgGCGGCgGGAGCGCc -3' miRNA: 3'- -UGGUaauGCCaca-UGCCGgUCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 3103 | 0.66 | 0.93327 |
Target: 5'- gGCCGgcaggccGCGGcccgccGCGGCCgAGAGCACc -3' miRNA: 3'- -UGGUaa-----UGCCaca---UGCCGG-UCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 14147 | 0.66 | 0.93327 |
Target: 5'- gGCCGgcUGCGcagcgGCGGCCGGGGCGg -3' miRNA: 3'- -UGGUa-AUGCcaca-UGCCGGUCUCGUg -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 105916 | 0.66 | 0.93327 |
Target: 5'- gGCCGgcaggccGCGGcccgccGCGGCCgAGAGCACc -3' miRNA: 3'- -UGGUaa-----UGCCaca---UGCCGG-UCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 92200 | 0.66 | 0.93327 |
Target: 5'- cCCGcgcGCGGcGUcggccgcuuggGCGGCCAGcAGCGCg -3' miRNA: 3'- uGGUaa-UGCCaCA-----------UGCCGGUC-UCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 31692 | 0.66 | 0.93327 |
Target: 5'- gGCCGUgucUGCGcUGUACGGCgC-GAGCGa -3' miRNA: 3'- -UGGUA---AUGCcACAUGCCG-GuCUCGUg -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 83059 | 0.66 | 0.93327 |
Target: 5'- gGCC---GCGGc--GCGGCCgaAGAGCGCa -3' miRNA: 3'- -UGGuaaUGCCacaUGCCGG--UCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 59856 | 0.66 | 0.927963 |
Target: 5'- gGCCAggcGCGGUcgccgAgGGCCGGcGCGCg -3' miRNA: 3'- -UGGUaa-UGCCAca---UgCCGGUCuCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 27912 | 0.66 | 0.927963 |
Target: 5'- gGCCGcgcUUGCGGa----GGCCAGGGCGg -3' miRNA: 3'- -UGGU---AAUGCCacaugCCGGUCUCGUg -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 50157 | 0.66 | 0.927963 |
Target: 5'- gGCCGUgucgauCGag--GCGGCCAuGAGCACg -3' miRNA: 3'- -UGGUAau----GCcacaUGCCGGU-CUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 86019 | 0.66 | 0.927963 |
Target: 5'- -----gGCGGgGcGCGGCgGGAGCGCg -3' miRNA: 3'- ugguaaUGCCaCaUGCCGgUCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 31932 | 0.66 | 0.927963 |
Target: 5'- gGCCc---CGGUcu-CGGUCGGAGCGCg -3' miRNA: 3'- -UGGuaauGCCAcauGCCGGUCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 13905 | 0.66 | 0.927963 |
Target: 5'- uGCCAcgACGGU----GGCUGGGGCGCu -3' miRNA: 3'- -UGGUaaUGCCAcaugCCGGUCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 6741 | 0.66 | 0.926871 |
Target: 5'- -aCAUaGCGGgcgucgucugcgGUGCGGCCGGuGCGa -3' miRNA: 3'- ugGUAaUGCCa-----------CAUGCCGGUCuCGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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