miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 59239 0.66 0.922402
Target:  5'- gGCCGUcgGCGaUGgcgcCGGCCAGGGC-Ca -3'
miRNA:   3'- -UGGUAa-UGCcACau--GCCGGUCUCGuG- -5'
6648 5' -53.9 NC_001847.1 + 80692 0.66 0.922402
Target:  5'- cGCCGgcgGCGGc-UGCGGCUGGAagaaGCACa -3'
miRNA:   3'- -UGGUaa-UGCCacAUGCCGGUCU----CGUG- -5'
6648 5' -53.9 NC_001847.1 + 54413 0.66 0.922402
Target:  5'- cGCCGccGCGGuUGgccucgGCGGCCcGGGCAg -3'
miRNA:   3'- -UGGUaaUGCC-ACa-----UGCCGGuCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 132057 0.66 0.922402
Target:  5'- uGCCGgccGCGGccUGCGcGCCGGAcGCGCu -3'
miRNA:   3'- -UGGUaa-UGCCacAUGC-CGGUCU-CGUG- -5'
6648 5' -53.9 NC_001847.1 + 29244 0.66 0.922402
Target:  5'- uGCCGgccGCGGccUGCGcGCCGGAcGCGCu -3'
miRNA:   3'- -UGGUaa-UGCCacAUGC-CGGUCU-CGUG- -5'
6648 5' -53.9 NC_001847.1 + 92798 0.66 0.922402
Target:  5'- cACCGaggAC-GUGgcCGGCUGGAGCGCc -3'
miRNA:   3'- -UGGUaa-UGcCACauGCCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 15242 0.66 0.922402
Target:  5'- cGCCGgcgGCGGcg-GCGGCCAc-GCACg -3'
miRNA:   3'- -UGGUaa-UGCCacaUGCCGGUcuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 57980 0.67 0.916588
Target:  5'- cGCuCGUgucaGCGGUcGaGCGGCaAGAGCACa -3'
miRNA:   3'- -UG-GUAa---UGCCA-CaUGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 122356 0.67 0.916588
Target:  5'- gAUCGUUggGCGGcGUGCGGCac-AGCGCg -3'
miRNA:   3'- -UGGUAA--UGCCaCAUGCCGgucUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 46318 0.67 0.916588
Target:  5'- gUCGUUACGGUGgccGCGaccGCCAG-GCAa -3'
miRNA:   3'- uGGUAAUGCCACa--UGC---CGGUCuCGUg -5'
6648 5' -53.9 NC_001847.1 + 31154 0.67 0.910521
Target:  5'- gGCCGcgGCGGUGgccuucugcGCGGCCgcgcugccGGAGcCGCg -3'
miRNA:   3'- -UGGUaaUGCCACa--------UGCCGG--------UCUC-GUG- -5'
6648 5' -53.9 NC_001847.1 + 65496 0.67 0.910521
Target:  5'- uCCAUggcGCGGUGUGgGGC-GGcGCGCg -3'
miRNA:   3'- uGGUAa--UGCCACAUgCCGgUCuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 133967 0.67 0.910521
Target:  5'- gGCCGcgGCGGUGgccuucugcGCGGCCgcgcugccGGAGcCGCg -3'
miRNA:   3'- -UGGUaaUGCCACa--------UGCCGG--------UCUC-GUG- -5'
6648 5' -53.9 NC_001847.1 + 3944 0.67 0.908024
Target:  5'- cGCCGcgGCGGgggGggcgccgucuccgGCGGCgAGGGCGCc -3'
miRNA:   3'- -UGGUaaUGCCa--Ca------------UGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 115763 0.67 0.901606
Target:  5'- aGCCG--ACGGggagccggcuCGGCCAGAGCGu -3'
miRNA:   3'- -UGGUaaUGCCacau------GCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 45099 0.67 0.897636
Target:  5'- cGCCGggACGGggGUGgGGgcagacaaCAGAGCGCg -3'
miRNA:   3'- -UGGUaaUGCCa-CAUgCCg-------GUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 53607 0.67 0.897636
Target:  5'- gGCC---ACGGUGgcggGCGGCgGGguGGCACc -3'
miRNA:   3'- -UGGuaaUGCCACa---UGCCGgUC--UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 125438 0.67 0.897636
Target:  5'- gACCc--GCGcGUGgcUGGCCGGAGgACg -3'
miRNA:   3'- -UGGuaaUGC-CACauGCCGGUCUCgUG- -5'
6648 5' -53.9 NC_001847.1 + 6682 0.67 0.897636
Target:  5'- gGCCGcgGCGGc---CGGCCGGGcGCGCg -3'
miRNA:   3'- -UGGUaaUGCCacauGCCGGUCU-CGUG- -5'
6648 5' -53.9 NC_001847.1 + 29353 0.67 0.895618
Target:  5'- gGCCGUUgaaaacaGCGGcgaccgcgcgGCGGCCGGAGCu- -3'
miRNA:   3'- -UGGUAA-------UGCCaca-------UGCCGGUCUCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.