miRNA display CGI


Results 61 - 80 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 2067 0.67 0.890824
Target:  5'- cGCCGcaGCGGUG-GCGGC--GAGCGCc -3'
miRNA:   3'- -UGGUaaUGCCACaUGCCGguCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 3528 0.67 0.890824
Target:  5'- gGCCGUgGCcGacUACGGCCGcGAGCGCg -3'
miRNA:   3'- -UGGUAaUGcCacAUGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 104880 0.67 0.890824
Target:  5'- cGCCGcaGCGGUG-GCGGC--GAGCGCc -3'
miRNA:   3'- -UGGUaaUGCCACaUGCCGguCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 36951 0.67 0.890824
Target:  5'- gGCCGa-GCGGggGcUGCGGCCAGcgcgGGCGCc -3'
miRNA:   3'- -UGGUaaUGCCa-C-AUGCCGGUC----UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 13803 0.67 0.890824
Target:  5'- aGCCGgcgcaGCGGUGUACgggGGCCGGcgugugacgguGCGCg -3'
miRNA:   3'- -UGGUaa---UGCCACAUG---CCGGUCu----------CGUG- -5'
6648 5' -53.9 NC_001847.1 + 41262 0.68 0.883771
Target:  5'- uGCCAUUuuuugcCGGcGcGCGGUCAGcAGCGCg -3'
miRNA:   3'- -UGGUAAu-----GCCaCaUGCCGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 102030 0.68 0.876481
Target:  5'- cGCCGccGCGGU---CGGCCAGgauGGCGCg -3'
miRNA:   3'- -UGGUaaUGCCAcauGCCGGUC---UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 134744 0.68 0.876481
Target:  5'- gGCCcu--CGGUcu-CGGUCGGAGCGCg -3'
miRNA:   3'- -UGGuaauGCCAcauGCCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 133284 0.68 0.876481
Target:  5'- aGCCGc-GCGGUGcgcucCGGCgCAGAGUGCg -3'
miRNA:   3'- -UGGUaaUGCCACau---GCCG-GUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 87338 0.68 0.876481
Target:  5'- cCCGUcccCGGUGU-CGGCCGagggccuggccGAGCACc -3'
miRNA:   3'- uGGUAau-GCCACAuGCCGGU-----------CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 37795 0.68 0.875739
Target:  5'- uGCC--UGCGGcUGUuugacacGCGGCCGGgcgGGCGCg -3'
miRNA:   3'- -UGGuaAUGCC-ACA-------UGCCGGUC---UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 86520 0.68 0.868959
Target:  5'- cGCCGccGCGGcGUucacaucggcACGGCC-GAGCGCg -3'
miRNA:   3'- -UGGUaaUGCCaCA----------UGCCGGuCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 57989 0.68 0.868959
Target:  5'- gACCGgcGCGGUG-GCGGCgCAGGcggcggcggucGCGCg -3'
miRNA:   3'- -UGGUaaUGCCACaUGCCG-GUCU-----------CGUG- -5'
6648 5' -53.9 NC_001847.1 + 32208 0.68 0.868959
Target:  5'- gGCCc--GCGG-GcGgGGCCGGGGCGCg -3'
miRNA:   3'- -UGGuaaUGCCaCaUgCCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 135021 0.68 0.868959
Target:  5'- gGCCc--GCGG-GcGgGGCCGGGGCGCg -3'
miRNA:   3'- -UGGuaaUGCCaCaUgCCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 56854 0.68 0.86121
Target:  5'- cGCCGUcUGCGcccgGCGGCCcGGGCGCg -3'
miRNA:   3'- -UGGUA-AUGCcacaUGCCGGuCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 118670 0.68 0.86121
Target:  5'- cCCAggcaggGCGGggGUugGGCCGGGcCGCa -3'
miRNA:   3'- uGGUaa----UGCCa-CAugCCGGUCUcGUG- -5'
6648 5' -53.9 NC_001847.1 + 70392 0.69 0.836677
Target:  5'- cCCGggUGCGacUGUACGGCCGGGGUg- -3'
miRNA:   3'- uGGUa-AUGCc-ACAUGCCGGUCUCGug -5'
6648 5' -53.9 NC_001847.1 + 5374 0.69 0.836677
Target:  5'- cCCAggcuccgGCGGUccGaGCGGCCGGcGGCACa -3'
miRNA:   3'- uGGUaa-----UGCCA--CaUGCCGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 108098 0.69 0.836677
Target:  5'- cCCGgggACGGggGUACGGC--GAGCGCg -3'
miRNA:   3'- uGGUaa-UGCCa-CAUGCCGguCUCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.