miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 2067 0.67 0.890824
Target:  5'- cGCCGcaGCGGUG-GCGGC--GAGCGCc -3'
miRNA:   3'- -UGGUaaUGCCACaUGCCGguCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 3103 0.66 0.93327
Target:  5'- gGCCGgcaggccGCGGcccgccGCGGCCgAGAGCACc -3'
miRNA:   3'- -UGGUaa-----UGCCaca---UGCCGG-UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 3528 0.67 0.890824
Target:  5'- gGCCGUgGCcGacUACGGCCGcGAGCGCg -3'
miRNA:   3'- -UGGUAaUGcCacAUGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 3809 0.66 0.943124
Target:  5'- uGCCGgcACGGggcGU-CGGCCGcGAGCGu -3'
miRNA:   3'- -UGGUaaUGCCa--CAuGCCGGU-CUCGUg -5'
6648 5' -53.9 NC_001847.1 + 3944 0.67 0.908024
Target:  5'- cGCCGcgGCGGgggGggcgccgucuccgGCGGCgAGGGCGCc -3'
miRNA:   3'- -UGGUaaUGCCa--Ca------------UGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 3967 0.66 0.938323
Target:  5'- cGCCAgcGCGaG-GUG-GGCCGuGAGCACg -3'
miRNA:   3'- -UGGUaaUGC-CaCAUgCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 5285 0.69 0.836677
Target:  5'- cCCGgggACGGggGUACGGC--GAGCGCg -3'
miRNA:   3'- uGGUaa-UGCCa-CAUGCCGguCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 5374 0.69 0.836677
Target:  5'- cCCAggcuccgGCGGUccGaGCGGCCGGcGGCACa -3'
miRNA:   3'- uGGUaa-----UGCCA--CaUGCCGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 6682 0.67 0.897636
Target:  5'- gGCCGcgGCGGc---CGGCCGGGcGCGCg -3'
miRNA:   3'- -UGGUaaUGCCacauGCCGGUCU-CGUG- -5'
6648 5' -53.9 NC_001847.1 + 6741 0.66 0.926871
Target:  5'- -aCAUaGCGGgcgucgucugcgGUGCGGCCGGuGCGa -3'
miRNA:   3'- ugGUAaUGCCa-----------CAUGCCGGUCuCGUg -5'
6648 5' -53.9 NC_001847.1 + 7254 0.69 0.810368
Target:  5'- gGCUG-UGCGG-GcGCGGCgGGGGCACg -3'
miRNA:   3'- -UGGUaAUGCCaCaUGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 7695 0.66 0.947674
Target:  5'- -aCGUUGCGGUGcuggaGCGcGCCuuGGGCAUu -3'
miRNA:   3'- ugGUAAUGCCACa----UGC-CGGu-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 7738 0.7 0.753372
Target:  5'- cGCgGgcGCGGaGgcgGCGGCCAGGGCAa -3'
miRNA:   3'- -UGgUaaUGCCaCa--UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 11877 0.72 0.671403
Target:  5'- uGCUAccACGGUGUaaucugguGCGGCCGGGGUccGCg -3'
miRNA:   3'- -UGGUaaUGCCACA--------UGCCGGUCUCG--UG- -5'
6648 5' -53.9 NC_001847.1 + 13101 0.73 0.629287
Target:  5'- uGCCAUUuuu-UGUcGCGGCCGGGGCGCg -3'
miRNA:   3'- -UGGUAAugccACA-UGCCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 13803 0.67 0.890824
Target:  5'- aGCCGgcgcaGCGGUGUACgggGGCCGGcgugugacgguGCGCg -3'
miRNA:   3'- -UGGUaa---UGCCACAUG---CCGGUCu----------CGUG- -5'
6648 5' -53.9 NC_001847.1 + 13905 0.66 0.927963
Target:  5'- uGCCAcgACGGU----GGCUGGGGCGCu -3'
miRNA:   3'- -UGGUaaUGCCAcaugCCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 14147 0.66 0.93327
Target:  5'- gGCCGgcUGCGcagcgGCGGCCGGGGCGg -3'
miRNA:   3'- -UGGUa-AUGCcaca-UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 15242 0.66 0.922402
Target:  5'- cGCCGgcgGCGGcg-GCGGCCAc-GCACg -3'
miRNA:   3'- -UGGUaa-UGCCacaUGCCGGUcuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 16008 0.66 0.944974
Target:  5'- gGCUcgcacuCGGUGUacuccauguaguacaGCGGCCGG-GCGCa -3'
miRNA:   3'- -UGGuaau--GCCACA---------------UGCCGGUCuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.