miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 17265 0.72 0.660902
Target:  5'- aGCCGUUGCGGaaccaGUGCaGGCgCguGGAGCGCg -3'
miRNA:   3'- -UGGUAAUGCCa----CAUG-CCG-G--UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 17454 0.71 0.733359
Target:  5'- cGCCcu--CGGUG-GCGGCCgucagGGAGCGCa -3'
miRNA:   3'- -UGGuaauGCCACaUGCCGG-----UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 17462 0.74 0.555972
Target:  5'- -----cGCGGUcGUACaGGCCGGGGCGCa -3'
miRNA:   3'- ugguaaUGCCA-CAUG-CCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 18205 0.69 0.819321
Target:  5'- cGCCAggcagcggUACGGgcUGUGCGGCUcucGGCGCg -3'
miRNA:   3'- -UGGUa-------AUGCC--ACAUGCCGGuc-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 20326 0.66 0.943124
Target:  5'- cGCCG--AgGGaccaUGUACcGCCAGGGCACc -3'
miRNA:   3'- -UGGUaaUgCC----ACAUGcCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 27912 0.66 0.927963
Target:  5'- gGCCGcgcUUGCGGa----GGCCAGGGCGg -3'
miRNA:   3'- -UGGU---AAUGCCacaugCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 27968 0.72 0.639835
Target:  5'- cGCgGUcGCGGUGgaggcggccGCGGCCGGGGCGg -3'
miRNA:   3'- -UGgUAaUGCCACa--------UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 28814 0.7 0.763213
Target:  5'- cGCCGUUcacgcaggcGCGGUgGUGCGGCUgcuAGAacGCGCg -3'
miRNA:   3'- -UGGUAA---------UGCCA-CAUGCCGG---UCU--CGUG- -5'
6648 5' -53.9 NC_001847.1 + 29244 0.66 0.922402
Target:  5'- uGCCGgccGCGGccUGCGcGCCGGAcGCGCu -3'
miRNA:   3'- -UGGUaa-UGCCacAUGC-CGGUCU-CGUG- -5'
6648 5' -53.9 NC_001847.1 + 29353 0.67 0.895618
Target:  5'- gGCCGUUgaaaacaGCGGcgaccgcgcgGCGGCCGGAGCu- -3'
miRNA:   3'- -UGGUAA-------UGCCaca-------UGCCGGUCUCGug -5'
6648 5' -53.9 NC_001847.1 + 29783 0.66 0.938323
Target:  5'- gGCCGcccCGGcccgGCGGCgGGAGCGCc -3'
miRNA:   3'- -UGGUaauGCCaca-UGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 30060 0.7 0.753372
Target:  5'- uGCCGgcGCGGUGgcGCGGCUGGgAGUGCu -3'
miRNA:   3'- -UGGUaaUGCCACa-UGCCGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 30711 0.66 0.947674
Target:  5'- cGCC---GCGGUGcugccGCGGCgCAGuGCGCc -3'
miRNA:   3'- -UGGuaaUGCCACa----UGCCG-GUCuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 31154 0.67 0.910521
Target:  5'- gGCCGcgGCGGUGgccuucugcGCGGCCgcgcugccGGAGcCGCg -3'
miRNA:   3'- -UGGUaaUGCCACa--------UGCCGG--------UCUC-GUG- -5'
6648 5' -53.9 NC_001847.1 + 31194 0.73 0.633506
Target:  5'- cGCCAUcgACGGUGcucucgcugagggcGCGGCguGGGCGCg -3'
miRNA:   3'- -UGGUAa-UGCCACa-------------UGCCGguCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 31316 0.69 0.819321
Target:  5'- cGCC---GCGGgcgGCGGCCugguGGAGCGCg -3'
miRNA:   3'- -UGGuaaUGCCacaUGCCGG----UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 31423 0.66 0.938323
Target:  5'- cGCCG--GCGGgcgGCGGCCGGcGGcCGCg -3'
miRNA:   3'- -UGGUaaUGCCacaUGCCGGUC-UC-GUG- -5'
6648 5' -53.9 NC_001847.1 + 31692 0.66 0.93327
Target:  5'- gGCCGUgucUGCGcUGUACGGCgC-GAGCGa -3'
miRNA:   3'- -UGGUA---AUGCcACAUGCCG-GuCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 31806 0.75 0.484348
Target:  5'- gGCCGUgGCGGUGgGCGGCgcgggggCAGAGUGCg -3'
miRNA:   3'- -UGGUAaUGCCACaUGCCG-------GUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 31932 0.66 0.927963
Target:  5'- gGCCc---CGGUcu-CGGUCGGAGCGCg -3'
miRNA:   3'- -UGGuaauGCCAcauGCCGGUCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.