miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 32162 0.66 0.947674
Target:  5'- cGCCGcgACGGcGUGCGcGgCGGAGCu- -3'
miRNA:   3'- -UGGUaaUGCCaCAUGC-CgGUCUCGug -5'
6648 5' -53.9 NC_001847.1 + 32208 0.68 0.868959
Target:  5'- gGCCc--GCGG-GcGgGGCCGGGGCGCg -3'
miRNA:   3'- -UGGuaaUGCCaCaUgCCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 32985 0.79 0.319701
Target:  5'- cGCCGggGCGGgcaggGCGGCCGGAGCGg -3'
miRNA:   3'- -UGGUaaUGCCaca--UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 34130 0.66 0.947674
Target:  5'- cGCCugccGCGGUGgccgccGCGGCgAGcGCGCu -3'
miRNA:   3'- -UGGuaa-UGCCACa-----UGCCGgUCuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 36951 0.67 0.890824
Target:  5'- gGCCGa-GCGGggGcUGCGGCCAGcgcgGGCGCc -3'
miRNA:   3'- -UGGUaaUGCCa-C-AUGCCGGUC----UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 37584 0.7 0.791955
Target:  5'- gGCCGcUGCGGcUGcgGCGGCCGGGggccggcccGCGCu -3'
miRNA:   3'- -UGGUaAUGCC-ACa-UGCCGGUCU---------CGUG- -5'
6648 5' -53.9 NC_001847.1 + 37795 0.68 0.875739
Target:  5'- uGCC--UGCGGcUGUuugacacGCGGCCGGgcgGGCGCg -3'
miRNA:   3'- -UGGuaAUGCC-ACA-------UGCCGGUC---UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 41262 0.68 0.883771
Target:  5'- uGCCAUUuuuugcCGGcGcGCGGUCAGcAGCGCg -3'
miRNA:   3'- -UGGUAAu-----GCCaCaUGCCGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 43223 0.77 0.410259
Target:  5'- cGCCGUUGCccGGUG-GCGGUgGGGGCGCg -3'
miRNA:   3'- -UGGUAAUG--CCACaUGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 44022 0.66 0.947674
Target:  5'- gGCC---GCGuGUGUGCGGgCuuguGGGCGCu -3'
miRNA:   3'- -UGGuaaUGC-CACAUGCCgGu---CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 45099 0.67 0.897636
Target:  5'- cGCCGggACGGggGUGgGGgcagacaaCAGAGCGCg -3'
miRNA:   3'- -UGGUaaUGCCa-CAUgCCg-------GUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 46318 0.67 0.916588
Target:  5'- gUCGUUACGGUGgccGCGaccGCCAG-GCAa -3'
miRNA:   3'- uGGUAAUGCCACa--UGC---CGGUCuCGUg -5'
6648 5' -53.9 NC_001847.1 + 47818 0.66 0.947674
Target:  5'- cACCGgggACGGgaugccgGCGGCCAauGCGCg -3'
miRNA:   3'- -UGGUaa-UGCCaca----UGCCGGUcuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 50157 0.66 0.927963
Target:  5'- gGCCGUgucgauCGag--GCGGCCAuGAGCACg -3'
miRNA:   3'- -UGGUAau----GCcacaUGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 53607 0.67 0.897636
Target:  5'- gGCC---ACGGUGgcggGCGGCgGGguGGCACc -3'
miRNA:   3'- -UGGuaaUGCCACa---UGCCGgUC--UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 54413 0.66 0.922402
Target:  5'- cGCCGccGCGGuUGgccucgGCGGCCcGGGCAg -3'
miRNA:   3'- -UGGUaaUGCC-ACa-----UGCCGGuCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 54509 0.66 0.947674
Target:  5'- gGCCGgggugggggGCGGUGgggcGgGGCCguccgGGGGCGCa -3'
miRNA:   3'- -UGGUaa-------UGCCACa---UgCCGG-----UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 54764 0.66 0.938323
Target:  5'- cGCCAccagACGGUcGUcccaGGCguGGGCACg -3'
miRNA:   3'- -UGGUaa--UGCCA-CAug--CCGguCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 56854 0.68 0.86121
Target:  5'- cGCCGUcUGCGcccgGCGGCCcGGGCGCg -3'
miRNA:   3'- -UGGUA-AUGCcacaUGCCGGuCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 57980 0.67 0.916588
Target:  5'- cGCuCGUgucaGCGGUcGaGCGGCaAGAGCACa -3'
miRNA:   3'- -UG-GUAa---UGCCA-CaUGCCGgUCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.