miRNA display CGI


Results 81 - 100 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 87338 0.68 0.876481
Target:  5'- cCCGUcccCGGUGU-CGGCCGagggccuggccGAGCACc -3'
miRNA:   3'- uGGUAau-GCCACAuGCCGGU-----------CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 88094 0.66 0.943124
Target:  5'- aGCUGUcgGCGGUGgcgcgGCuGGCCGGAaucacggugucGCGCg -3'
miRNA:   3'- -UGGUAa-UGCCACa----UG-CCGGUCU-----------CGUG- -5'
6648 5' -53.9 NC_001847.1 + 90863 0.7 0.753372
Target:  5'- gGCCGggGCuGGUGUcgaGGCCGGGGC-Cg -3'
miRNA:   3'- -UGGUaaUG-CCACAug-CCGGUCUCGuG- -5'
6648 5' -53.9 NC_001847.1 + 92200 0.66 0.93327
Target:  5'- cCCGcgcGCGGcGUcggccgcuuggGCGGCCAGcAGCGCg -3'
miRNA:   3'- uGGUaa-UGCCaCA-----------UGCCGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 92480 0.71 0.723208
Target:  5'- gGCCAgcGCGGcg-GCGGCCucuucgacaaAGGGCACg -3'
miRNA:   3'- -UGGUaaUGCCacaUGCCGG----------UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 92798 0.66 0.922402
Target:  5'- cACCGaggAC-GUGgcCGGCUGGAGCGCc -3'
miRNA:   3'- -UGGUaa-UGcCACauGCCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 94464 0.66 0.942655
Target:  5'- -gCGUUGCGGUGUuuauuguGCGGCaa-AGUACa -3'
miRNA:   3'- ugGUAAUGCCACA-------UGCCGgucUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 96613 1.1 0.003024
Target:  5'- cACCAUUACGGUGUACGGCCAGAGCACa -3'
miRNA:   3'- -UGGUAAUGCCACAUGCCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 97201 0.71 0.743417
Target:  5'- uACCggUGCGGU-UGCucGCCGGGGCGCg -3'
miRNA:   3'- -UGGuaAUGCCAcAUGc-CGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 97526 0.69 0.810368
Target:  5'- uGCaCGcUAUGGUGUACuuGGCCAGcguGCGCu -3'
miRNA:   3'- -UG-GUaAUGCCACAUG--CCGGUCu--CGUG- -5'
6648 5' -53.9 NC_001847.1 + 99373 0.69 0.819321
Target:  5'- cGCCGUUaGCGG-GUGCGaGUCgaugauAGAGCGCg -3'
miRNA:   3'- -UGGUAA-UGCCaCAUGC-CGG------UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 99799 0.66 0.938323
Target:  5'- cGCCuguggUGCGGgGUcggaGCGGCCGGGGgcCGCu -3'
miRNA:   3'- -UGGua---AUGCCaCA----UGCCGGUCUC--GUG- -5'
6648 5' -53.9 NC_001847.1 + 100814 0.7 0.791955
Target:  5'- uGCCAUUGCGGccgaccuCGGCCcGGGCGg -3'
miRNA:   3'- -UGGUAAUGCCacau---GCCGGuCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 101829 0.69 0.828093
Target:  5'- gGCCGUcuuCGGUGUGCGccguugcgccuGCCGcGAGCAg -3'
miRNA:   3'- -UGGUAau-GCCACAUGC-----------CGGU-CUCGUg -5'
6648 5' -53.9 NC_001847.1 + 102030 0.68 0.876481
Target:  5'- cGCCGccGCGGU---CGGCCAGgauGGCGCg -3'
miRNA:   3'- -UGGUaaUGCCAcauGCCGGUC---UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 104880 0.67 0.890824
Target:  5'- cGCCGcaGCGGUG-GCGGC--GAGCGCc -3'
miRNA:   3'- -UGGUaaUGCCACaUGCCGguCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 105916 0.66 0.93327
Target:  5'- gGCCGgcaggccGCGGcccgccGCGGCCgAGAGCACc -3'
miRNA:   3'- -UGGUaa-----UGCCaca---UGCCGG-UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 106713 0.73 0.629287
Target:  5'- uCCAguugGCGGcGUGC-GCCAGGGCGCu -3'
miRNA:   3'- uGGUaa--UGCCaCAUGcCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 107031 0.73 0.608207
Target:  5'- gGCCAUgaaaucgGCGGUGUcgcgcGCGGCCccGGGCAg -3'
miRNA:   3'- -UGGUAa------UGCCACA-----UGCCGGu-CUCGUg -5'
6648 5' -53.9 NC_001847.1 + 108098 0.69 0.836677
Target:  5'- cCCGgggACGGggGUACGGC--GAGCGCg -3'
miRNA:   3'- uGGUaa-UGCCa-CAUGCCGguCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.