miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 135021 0.68 0.868959
Target:  5'- gGCCc--GCGG-GcGgGGCCGGGGCGCg -3'
miRNA:   3'- -UGGuaaUGCCaCaUgCCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 134744 0.68 0.876481
Target:  5'- gGCCcu--CGGUcu-CGGUCGGAGCGCg -3'
miRNA:   3'- -UGGuaauGCCAcauGCCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 134236 0.66 0.938323
Target:  5'- cGCCG--GCGGgcgGCGGCCGGcGGcCGCg -3'
miRNA:   3'- -UGGUaaUGCCacaUGCCGGUC-UC-GUG- -5'
6648 5' -53.9 NC_001847.1 + 134129 0.69 0.819321
Target:  5'- cGCC---GCGGgcgGCGGCCugguGGAGCGCg -3'
miRNA:   3'- -UGGuaaUGCCacaUGCCGG----UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 133967 0.67 0.910521
Target:  5'- gGCCGcgGCGGUGgccuucugcGCGGCCgcgcugccGGAGcCGCg -3'
miRNA:   3'- -UGGUaaUGCCACa--------UGCCGG--------UCUC-GUG- -5'
6648 5' -53.9 NC_001847.1 + 133524 0.66 0.947674
Target:  5'- cGCC---GCGGUGcugccGCGGCgCAGuGCGCc -3'
miRNA:   3'- -UGGuaaUGCCACa----UGCCG-GUCuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 133284 0.68 0.876481
Target:  5'- aGCCGc-GCGGUGcgcucCGGCgCAGAGUGCg -3'
miRNA:   3'- -UGGUaaUGCCACau---GCCG-GUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 132596 0.66 0.938323
Target:  5'- gGCCGcccCGGcccgGCGGCgGGAGCGCc -3'
miRNA:   3'- -UGGUaauGCCaca-UGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 132057 0.66 0.922402
Target:  5'- uGCCGgccGCGGccUGCGcGCCGGAcGCGCu -3'
miRNA:   3'- -UGGUaa-UGCCacAUGC-CGGUCU-CGUG- -5'
6648 5' -53.9 NC_001847.1 + 131947 0.66 0.943124
Target:  5'- cGCCGgcgaugGCGGcGacgGCGGCgAGAGCGg -3'
miRNA:   3'- -UGGUaa----UGCCaCa--UGCCGgUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 130781 0.72 0.639835
Target:  5'- cGCgGUcGCGGUGgaggcggccGCGGCCGGGGCGg -3'
miRNA:   3'- -UGgUAaUGCCACa--------UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 125438 0.67 0.897636
Target:  5'- gACCc--GCGcGUGgcUGGCCGGAGgACg -3'
miRNA:   3'- -UGGuaaUGC-CACauGCCGGUCUCgUG- -5'
6648 5' -53.9 NC_001847.1 + 125230 0.66 0.938323
Target:  5'- cGCCugc-CGGgcguacucgGCGGCCAcGAGCGCg -3'
miRNA:   3'- -UGGuaauGCCaca------UGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 123615 0.7 0.791955
Target:  5'- aGCCAagGCGGcaaacuCGGCCGGGGCGg -3'
miRNA:   3'- -UGGUaaUGCCacau--GCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 123041 0.66 0.943124
Target:  5'- gGCCGc--UGGaaGUACGGCCGcGGGCGCc -3'
miRNA:   3'- -UGGUaauGCCa-CAUGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 122916 0.72 0.671403
Target:  5'- cGCCGUUcgGGUGUGCGcgcgccgcgcaaGCCAGaAGCGCa -3'
miRNA:   3'- -UGGUAAugCCACAUGC------------CGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 122356 0.67 0.916588
Target:  5'- gAUCGUUggGCGGcGUGCGGCac-AGCGCg -3'
miRNA:   3'- -UGGUAA--UGCCaCAUGCCGgucUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 121671 0.71 0.733359
Target:  5'- cGCCGcUGUGGgGUGCGGCCcGAGCAg -3'
miRNA:   3'- -UGGUaAUGCCaCAUGCCGGuCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 118670 0.68 0.86121
Target:  5'- cCCAggcaggGCGGggGUugGGCCGGGcCGCa -3'
miRNA:   3'- uGGUaa----UGCCa-CAugCCGGUCUcGUG- -5'
6648 5' -53.9 NC_001847.1 + 115763 0.67 0.901606
Target:  5'- aGCCG--ACGGggagccggcuCGGCCAGAGCGu -3'
miRNA:   3'- -UGGUaaUGCCacau------GCCGGUCUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.