miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 88094 0.66 0.943124
Target:  5'- aGCUGUcgGCGGUGgcgcgGCuGGCCGGAaucacggugucGCGCg -3'
miRNA:   3'- -UGGUAa-UGCCACa----UG-CCGGUCU-----------CGUG- -5'
6648 5' -53.9 NC_001847.1 + 87338 0.68 0.876481
Target:  5'- cCCGUcccCGGUGU-CGGCCGagggccuggccGAGCACc -3'
miRNA:   3'- uGGUAau-GCCACAuGCCGGU-----------CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 86520 0.68 0.868959
Target:  5'- cGCCGccGCGGcGUucacaucggcACGGCC-GAGCGCg -3'
miRNA:   3'- -UGGUaaUGCCaCA----------UGCCGGuCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 86019 0.66 0.927963
Target:  5'- -----gGCGGgGcGCGGCgGGAGCGCg -3'
miRNA:   3'- ugguaaUGCCaCaUGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 85783 0.66 0.938323
Target:  5'- gGCCGaUGCGGUGcGCGuCgAGGGUGCg -3'
miRNA:   3'- -UGGUaAUGCCACaUGCcGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 83059 0.66 0.93327
Target:  5'- gGCC---GCGGc--GCGGCCgaAGAGCGCa -3'
miRNA:   3'- -UGGuaaUGCCacaUGCCGG--UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 80692 0.66 0.922402
Target:  5'- cGCCGgcgGCGGc-UGCGGCUGGAagaaGCACa -3'
miRNA:   3'- -UGGUaa-UGCCacAUGCCGGUCU----CGUG- -5'
6648 5' -53.9 NC_001847.1 + 76411 0.71 0.712973
Target:  5'- gGCCGcgGCGGgggcaccccGCGGCgGGAGCGCg -3'
miRNA:   3'- -UGGUaaUGCCaca------UGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 75442 0.69 0.821972
Target:  5'- gGCgAgcGCGGUGUucccgcuGCcgaccgggggggaggGGCCAGAGCGCa -3'
miRNA:   3'- -UGgUaaUGCCACA-------UG---------------CCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 72710 0.66 0.947674
Target:  5'- gGCCGcc-CGGUGgGCGGCagCAG-GCACg -3'
miRNA:   3'- -UGGUaauGCCACaUGCCG--GUCuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 71860 0.78 0.358923
Target:  5'- cCCA--GCGGUGgaaGCGGCCGcGAGCGCg -3'
miRNA:   3'- uGGUaaUGCCACa--UGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 71015 0.66 0.947674
Target:  5'- uUCGUU-CGGc--GCGGCCAuGGGCACg -3'
miRNA:   3'- uGGUAAuGCCacaUGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 70693 0.72 0.650376
Target:  5'- cGCCGccGCGGgcgGCGGCgGGGGCGCc -3'
miRNA:   3'- -UGGUaaUGCCacaUGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 70392 0.69 0.836677
Target:  5'- cCCGggUGCGacUGUACGGCCGGGGUg- -3'
miRNA:   3'- uGGUa-AUGCc-ACAUGCCGGUCUCGug -5'
6648 5' -53.9 NC_001847.1 + 68976 0.72 0.671403
Target:  5'- gGCCcgcGCGG-GcACGGCCgAGAGCACg -3'
miRNA:   3'- -UGGuaaUGCCaCaUGCCGG-UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 65496 0.67 0.910521
Target:  5'- uCCAUggcGCGGUGUGgGGC-GGcGCGCg -3'
miRNA:   3'- uGGUAa--UGCCACAUgCCGgUCuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 62526 0.7 0.791955
Target:  5'- gGCacggGCGGcacgugccGUGCGGCCAGcAGCGCg -3'
miRNA:   3'- -UGguaaUGCCa-------CAUGCCGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 61816 0.72 0.671403
Target:  5'- cACCAUUGCcaacaGGUcgGCGGCCAGGGUg- -3'
miRNA:   3'- -UGGUAAUG-----CCAcaUGCCGGUCUCGug -5'
6648 5' -53.9 NC_001847.1 + 59856 0.66 0.927963
Target:  5'- gGCCAggcGCGGUcgccgAgGGCCGGcGCGCg -3'
miRNA:   3'- -UGGUaa-UGCCAca---UgCCGGUCuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 59539 0.72 0.681871
Target:  5'- cGCuCAUggcagGCGGUGgggGCGGCgGGGGCGg -3'
miRNA:   3'- -UG-GUAa----UGCCACa--UGCCGgUCUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.