miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 134129 0.69 0.819321
Target:  5'- cGCC---GCGGgcgGCGGCCugguGGAGCGCg -3'
miRNA:   3'- -UGGuaaUGCCacaUGCCGG----UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 97201 0.71 0.743417
Target:  5'- uACCggUGCGGU-UGCucGCCGGGGCGCg -3'
miRNA:   3'- -UGGuaAUGCCAcAUGc-CGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 30060 0.7 0.753372
Target:  5'- uGCCGgcGCGGUGgcGCGGCUGGgAGUGCu -3'
miRNA:   3'- -UGGUaaUGCCACa-UGCCGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 7738 0.7 0.753372
Target:  5'- cGCgGgcGCGGaGgcgGCGGCCAGGGCAa -3'
miRNA:   3'- -UGgUaaUGCCaCa--UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 28814 0.7 0.763213
Target:  5'- cGCCGUUcacgcaggcGCGGUgGUGCGGCUgcuAGAacGCGCg -3'
miRNA:   3'- -UGGUAA---------UGCCA-CAUGCCGG---UCU--CGUG- -5'
6648 5' -53.9 NC_001847.1 + 37584 0.7 0.791955
Target:  5'- gGCCGcUGCGGcUGcgGCGGCCGGGggccggcccGCGCu -3'
miRNA:   3'- -UGGUaAUGCC-ACa-UGCCGGUCU---------CGUG- -5'
6648 5' -53.9 NC_001847.1 + 100814 0.7 0.791955
Target:  5'- uGCCAUUGCGGccgaccuCGGCCcGGGCGg -3'
miRNA:   3'- -UGGUAAUGCCacau---GCCGGuCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 7254 0.69 0.810368
Target:  5'- gGCUG-UGCGG-GcGCGGCgGGGGCACg -3'
miRNA:   3'- -UGGUaAUGCCaCaUGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 97526 0.69 0.810368
Target:  5'- uGCaCGcUAUGGUGUACuuGGCCAGcguGCGCu -3'
miRNA:   3'- -UG-GUaAUGCCACAUG--CCGGUCu--CGUG- -5'
6648 5' -53.9 NC_001847.1 + 17454 0.71 0.733359
Target:  5'- cGCCcu--CGGUG-GCGGCCgucagGGAGCGCa -3'
miRNA:   3'- -UGGuaauGCCACaUGCCGG-----UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 76411 0.71 0.712973
Target:  5'- gGCCGcgGCGGgggcaccccGCGGCgGGAGCGCg -3'
miRNA:   3'- -UGGUaaUGCCaca------UGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 59539 0.72 0.681871
Target:  5'- cGCuCAUggcagGCGGUGgggGCGGCgGGGGCGg -3'
miRNA:   3'- -UG-GUAa----UGCCACa--UGCCGgUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 43223 0.77 0.410259
Target:  5'- cGCCGUUGCccGGUG-GCGGUgGGGGCGCg -3'
miRNA:   3'- -UGGUAAUG--CCACaUGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 31806 0.75 0.484348
Target:  5'- gGCCGUgGCGGUGgGCGGCgcgggggCAGAGUGCg -3'
miRNA:   3'- -UGGUAaUGCCACaUGCCG-------GUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 13101 0.73 0.629287
Target:  5'- uGCCAUUuuu-UGUcGCGGCCGGGGCGCg -3'
miRNA:   3'- -UGGUAAugccACA-UGCCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 31194 0.73 0.633506
Target:  5'- cGCCAUcgACGGUGcucucgcugagggcGCGGCguGGGCGCg -3'
miRNA:   3'- -UGGUAa-UGCCACa-------------UGCCGguCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 130781 0.72 0.639835
Target:  5'- cGCgGUcGCGGUGgaggcggccGCGGCCGGGGCGg -3'
miRNA:   3'- -UGgUAaUGCCACa--------UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 17265 0.72 0.660902
Target:  5'- aGCCGUUGCGGaaccaGUGCaGGCgCguGGAGCGCg -3'
miRNA:   3'- -UGGUAAUGCCa----CAUG-CCG-G--UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 61816 0.72 0.671403
Target:  5'- cACCAUUGCcaacaGGUcgGCGGCCAGGGUg- -3'
miRNA:   3'- -UGGUAAUG-----CCAcaUGCCGGUCUCGug -5'
6648 5' -53.9 NC_001847.1 + 122916 0.72 0.671403
Target:  5'- cGCCGUUcgGGUGUGCGcgcgccgcgcaaGCCAGaAGCGCa -3'
miRNA:   3'- -UGGUAAugCCACAUGC------------CGGUC-UCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.