Results 41 - 60 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6648 | 5' | -53.9 | NC_001847.1 | + | 130781 | 0.72 | 0.639835 |
Target: 5'- cGCgGUcGCGGUGgaggcggccGCGGCCGGGGCGg -3' miRNA: 3'- -UGgUAaUGCCACa--------UGCCGGUCUCGUg -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 31194 | 0.73 | 0.633506 |
Target: 5'- cGCCAUcgACGGUGcucucgcugagggcGCGGCguGGGCGCg -3' miRNA: 3'- -UGGUAa-UGCCACa-------------UGCCGguCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 13101 | 0.73 | 0.629287 |
Target: 5'- uGCCAUUuuu-UGUcGCGGCCGGGGCGCg -3' miRNA: 3'- -UGGUAAugccACA-UGCCGGUCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 31806 | 0.75 | 0.484348 |
Target: 5'- gGCCGUgGCGGUGgGCGGCgcgggggCAGAGUGCg -3' miRNA: 3'- -UGGUAaUGCCACaUGCCG-------GUCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 43223 | 0.77 | 0.410259 |
Target: 5'- cGCCGUUGCccGGUG-GCGGUgGGGGCGCg -3' miRNA: 3'- -UGGUAAUG--CCACaUGCCGgUCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 7738 | 0.7 | 0.753372 |
Target: 5'- cGCgGgcGCGGaGgcgGCGGCCAGGGCAa -3' miRNA: 3'- -UGgUaaUGCCaCa--UGCCGGUCUCGUg -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 28814 | 0.7 | 0.763213 |
Target: 5'- cGCCGUUcacgcaggcGCGGUgGUGCGGCUgcuAGAacGCGCg -3' miRNA: 3'- -UGGUAA---------UGCCA-CAUGCCGG---UCU--CGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 87338 | 0.68 | 0.876481 |
Target: 5'- cCCGUcccCGGUGU-CGGCCGagggccuggccGAGCACc -3' miRNA: 3'- uGGUAau-GCCACAuGCCGGU-----------CUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 134744 | 0.68 | 0.876481 |
Target: 5'- gGCCcu--CGGUcu-CGGUCGGAGCGCg -3' miRNA: 3'- -UGGuaauGCCAcauGCCGGUCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 37795 | 0.68 | 0.875739 |
Target: 5'- uGCC--UGCGGcUGUuugacacGCGGCCGGgcgGGCGCg -3' miRNA: 3'- -UGGuaAUGCC-ACA-------UGCCGGUC---UCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 135021 | 0.68 | 0.868959 |
Target: 5'- gGCCc--GCGG-GcGgGGCCGGGGCGCg -3' miRNA: 3'- -UGGuaaUGCCaCaUgCCGGUCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 56854 | 0.68 | 0.86121 |
Target: 5'- cGCCGUcUGCGcccgGCGGCCcGGGCGCg -3' miRNA: 3'- -UGGUA-AUGCcacaUGCCGGuCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 118670 | 0.68 | 0.86121 |
Target: 5'- cCCAggcaggGCGGggGUugGGCCGGGcCGCa -3' miRNA: 3'- uGGUaa----UGCCa-CAugCCGGUCUcGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 5374 | 0.69 | 0.836677 |
Target: 5'- cCCAggcuccgGCGGUccGaGCGGCCGGcGGCACa -3' miRNA: 3'- uGGUaa-----UGCCA--CaUGCCGGUC-UCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 108098 | 0.69 | 0.836677 |
Target: 5'- cCCGgggACGGggGUACGGC--GAGCGCg -3' miRNA: 3'- uGGUaa-UGCCa-CAUGCCGguCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 134129 | 0.69 | 0.819321 |
Target: 5'- cGCC---GCGGgcgGCGGCCugguGGAGCGCg -3' miRNA: 3'- -UGGuaaUGCCacaUGCCGG----UCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 97526 | 0.69 | 0.810368 |
Target: 5'- uGCaCGcUAUGGUGUACuuGGCCAGcguGCGCu -3' miRNA: 3'- -UG-GUaAUGCCACAUG--CCGGUCu--CGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 7254 | 0.69 | 0.810368 |
Target: 5'- gGCUG-UGCGG-GcGCGGCgGGGGCACg -3' miRNA: 3'- -UGGUaAUGCCaCaUGCCGgUCUCGUG- -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 100814 | 0.7 | 0.791955 |
Target: 5'- uGCCAUUGCGGccgaccuCGGCCcGGGCGg -3' miRNA: 3'- -UGGUAAUGCCacau---GCCGGuCUCGUg -5' |
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6648 | 5' | -53.9 | NC_001847.1 | + | 37584 | 0.7 | 0.791955 |
Target: 5'- gGCCGcUGCGGcUGcgGCGGCCGGGggccggcccGCGCu -3' miRNA: 3'- -UGGUaAUGCC-ACa-UGCCGGUCU---------CGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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