miRNA display CGI


Results 61 - 80 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 56854 0.68 0.86121
Target:  5'- cGCCGUcUGCGcccgGCGGCCcGGGCGCg -3'
miRNA:   3'- -UGGUA-AUGCcacaUGCCGGuCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 7254 0.69 0.810368
Target:  5'- gGCUG-UGCGG-GcGCGGCgGGGGCACg -3'
miRNA:   3'- -UGGUaAUGCCaCaUGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 97526 0.69 0.810368
Target:  5'- uGCaCGcUAUGGUGUACuuGGCCAGcguGCGCu -3'
miRNA:   3'- -UG-GUaAUGCCACAUG--CCGGUCu--CGUG- -5'
6648 5' -53.9 NC_001847.1 + 134129 0.69 0.819321
Target:  5'- cGCC---GCGGgcgGCGGCCugguGGAGCGCg -3'
miRNA:   3'- -UGGuaaUGCCacaUGCCGG----UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 108098 0.69 0.836677
Target:  5'- cCCGgggACGGggGUACGGC--GAGCGCg -3'
miRNA:   3'- uGGUaa-UGCCa-CAUGCCGguCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 5374 0.69 0.836677
Target:  5'- cCCAggcuccgGCGGUccGaGCGGCCGGcGGCACa -3'
miRNA:   3'- uGGUaa-----UGCCA--CaUGCCGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 118670 0.68 0.86121
Target:  5'- cCCAggcaggGCGGggGUugGGCCGGGcCGCa -3'
miRNA:   3'- uGGUaa----UGCCa-CAugCCGGUCUcGUG- -5'
6648 5' -53.9 NC_001847.1 + 62526 0.7 0.791955
Target:  5'- gGCacggGCGGcacgugccGUGCGGCCAGcAGCGCg -3'
miRNA:   3'- -UGguaaUGCCa-------CAUGCCGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 90863 0.7 0.753372
Target:  5'- gGCCGggGCuGGUGUcgaGGCCGGGGC-Cg -3'
miRNA:   3'- -UGGUaaUG-CCACAug-CCGGUCUCGuG- -5'
6648 5' -53.9 NC_001847.1 + 121671 0.71 0.733359
Target:  5'- cGCCGcUGUGGgGUGCGGCCcGAGCAg -3'
miRNA:   3'- -UGGUaAUGCCaCAUGCCGGuCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 92480 0.71 0.723208
Target:  5'- gGCCAgcGCGGcg-GCGGCCucuucgacaaAGGGCACg -3'
miRNA:   3'- -UGGUaaUGCCacaUGCCGG----------UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 68976 0.72 0.671403
Target:  5'- gGCCcgcGCGG-GcACGGCCgAGAGCACg -3'
miRNA:   3'- -UGGuaaUGCCaCaUGCCGG-UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 11877 0.72 0.671403
Target:  5'- uGCUAccACGGUGUaaucugguGCGGCCGGGGUccGCg -3'
miRNA:   3'- -UGGUaaUGCCACA--------UGCCGGUCUCG--UG- -5'
6648 5' -53.9 NC_001847.1 + 70693 0.72 0.650376
Target:  5'- cGCCGccGCGGgcgGCGGCgGGGGCGCc -3'
miRNA:   3'- -UGGUaaUGCCacaUGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 27968 0.72 0.639835
Target:  5'- cGCgGUcGCGGUGgaggcggccGCGGCCGGGGCGg -3'
miRNA:   3'- -UGgUAaUGCCACa--------UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 106713 0.73 0.629287
Target:  5'- uCCAguugGCGGcGUGC-GCCAGGGCGCu -3'
miRNA:   3'- uGGUaa--UGCCaCAUGcCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 107031 0.73 0.608207
Target:  5'- gGCCAUgaaaucgGCGGUGUcgcgcGCGGCCccGGGCAg -3'
miRNA:   3'- -UGGUAa------UGCCACA-----UGCCGGu-CUCGUg -5'
6648 5' -53.9 NC_001847.1 + 17462 0.74 0.555972
Target:  5'- -----cGCGGUcGUACaGGCCGGGGCGCa -3'
miRNA:   3'- ugguaaUGCCA-CAUG-CCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 71860 0.78 0.358923
Target:  5'- cCCA--GCGGUGgaaGCGGCCGcGAGCGCg -3'
miRNA:   3'- uGGUaaUGCCACa--UGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 72710 0.66 0.947674
Target:  5'- gGCCGcc-CGGUGgGCGGCagCAG-GCACg -3'
miRNA:   3'- -UGGUaauGCCACaUGCCG--GUCuCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.