miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 32985 0.79 0.319701
Target:  5'- cGCCGggGCGGgcaggGCGGCCGGAGCGg -3'
miRNA:   3'- -UGGUaaUGCCaca--UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 99373 0.69 0.819321
Target:  5'- cGCCGUUaGCGG-GUGCGaGUCgaugauAGAGCGCg -3'
miRNA:   3'- -UGGUAA-UGCCaCAUGC-CGG------UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 101829 0.69 0.828093
Target:  5'- gGCCGUcuuCGGUGUGCGccguugcgccuGCCGcGAGCAg -3'
miRNA:   3'- -UGGUAau-GCCACAUGC-----------CGGU-CUCGUg -5'
6648 5' -53.9 NC_001847.1 + 72710 0.66 0.947674
Target:  5'- gGCCGcc-CGGUGgGCGGCagCAG-GCACg -3'
miRNA:   3'- -UGGUaauGCCACaUGCCG--GUCuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 106713 0.73 0.629287
Target:  5'- uCCAguugGCGGcGUGC-GCCAGGGCGCu -3'
miRNA:   3'- uGGUaa--UGCCaCAUGcCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 27968 0.72 0.639835
Target:  5'- cGCgGUcGCGGUGgaggcggccGCGGCCGGGGCGg -3'
miRNA:   3'- -UGgUAaUGCCACa--------UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 11877 0.72 0.671403
Target:  5'- uGCUAccACGGUGUaaucugguGCGGCCGGGGUccGCg -3'
miRNA:   3'- -UGGUaaUGCCACA--------UGCCGGUCUCG--UG- -5'
6648 5' -53.9 NC_001847.1 + 68976 0.72 0.671403
Target:  5'- gGCCcgcGCGG-GcACGGCCgAGAGCACg -3'
miRNA:   3'- -UGGuaaUGCCaCaUGCCGG-UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 90863 0.7 0.753372
Target:  5'- gGCCGggGCuGGUGUcgaGGCCGGGGC-Cg -3'
miRNA:   3'- -UGGUaaUG-CCACAug-CCGGUCUCGuG- -5'
6648 5' -53.9 NC_001847.1 + 18205 0.69 0.819321
Target:  5'- cGCCAggcagcggUACGGgcUGUGCGGCUcucGGCGCg -3'
miRNA:   3'- -UGGUa-------AUGCC--ACAUGCCGGuc-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 123615 0.7 0.791955
Target:  5'- aGCCAagGCGGcaaacuCGGCCGGGGCGg -3'
miRNA:   3'- -UGGUaaUGCCacau--GCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 121671 0.71 0.733359
Target:  5'- cGCCGcUGUGGgGUGCGGCCcGAGCAg -3'
miRNA:   3'- -UGGUaAUGCCaCAUGCCGGuCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 71860 0.78 0.358923
Target:  5'- cCCA--GCGGUGgaaGCGGCCGcGAGCGCg -3'
miRNA:   3'- uGGUaaUGCCACa--UGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 31316 0.69 0.819321
Target:  5'- cGCC---GCGGgcgGCGGCCugguGGAGCGCg -3'
miRNA:   3'- -UGGuaaUGCCacaUGCCGG----UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 17462 0.74 0.555972
Target:  5'- -----cGCGGUcGUACaGGCCGGGGCGCa -3'
miRNA:   3'- ugguaaUGCCA-CAUG-CCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 92480 0.71 0.723208
Target:  5'- gGCCAgcGCGGcg-GCGGCCucuucgacaaAGGGCACg -3'
miRNA:   3'- -UGGUaaUGCCacaUGCCGG----------UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 110563 0.69 0.819321
Target:  5'- cGCCAUUACcacaUGgacACGGCCGGGGaCGCg -3'
miRNA:   3'- -UGGUAAUGcc--ACa--UGCCGGUCUC-GUG- -5'
6648 5' -53.9 NC_001847.1 + 75442 0.69 0.821972
Target:  5'- gGCgAgcGCGGUGUucccgcuGCcgaccgggggggaggGGCCAGAGCGCa -3'
miRNA:   3'- -UGgUaaUGCCACA-------UG---------------CCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 107031 0.73 0.608207
Target:  5'- gGCCAUgaaaucgGCGGUGUcgcgcGCGGCCccGGGCAg -3'
miRNA:   3'- -UGGUAa------UGCCACA-----UGCCGGu-CUCGUg -5'
6648 5' -53.9 NC_001847.1 + 70693 0.72 0.650376
Target:  5'- cGCCGccGCGGgcgGCGGCgGGGGCGCc -3'
miRNA:   3'- -UGGUaaUGCCacaUGCCGgUCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.