miRNA display CGI


Results 41 - 60 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6648 5' -53.9 NC_001847.1 + 71860 0.78 0.358923
Target:  5'- cCCA--GCGGUGgaaGCGGCCGcGAGCGCg -3'
miRNA:   3'- uGGUaaUGCCACa--UGCCGGU-CUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 32985 0.79 0.319701
Target:  5'- cGCCGggGCGGgcaggGCGGCCGGAGCGg -3'
miRNA:   3'- -UGGUaaUGCCaca--UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 110421 0.66 0.943124
Target:  5'- gGCCuUUACGGccgaGUACGaGCgacuGGAGCGCg -3'
miRNA:   3'- -UGGuAAUGCCa---CAUGC-CGg---UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 3944 0.67 0.908024
Target:  5'- cGCCGcgGCGGgggGggcgccgucuccgGCGGCgAGGGCGCc -3'
miRNA:   3'- -UGGUaaUGCCa--Ca------------UGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 29783 0.66 0.938323
Target:  5'- gGCCGcccCGGcccgGCGGCgGGAGCGCc -3'
miRNA:   3'- -UGGUaauGCCaca-UGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 86019 0.66 0.927963
Target:  5'- -----gGCGGgGcGCGGCgGGAGCGCg -3'
miRNA:   3'- ugguaaUGCCaCaUGCCGgUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 15242 0.66 0.922402
Target:  5'- cGCCGgcgGCGGcg-GCGGCCAc-GCACg -3'
miRNA:   3'- -UGGUaa-UGCCacaUGCCGGUcuCGUG- -5'
6648 5' -53.9 NC_001847.1 + 133284 0.68 0.876481
Target:  5'- aGCCGc-GCGGUGcgcucCGGCgCAGAGUGCg -3'
miRNA:   3'- -UGGUaaUGCCACau---GCCG-GUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 57989 0.68 0.868959
Target:  5'- gACCGgcGCGGUG-GCGGCgCAGGcggcggcggucGCGCg -3'
miRNA:   3'- -UGGUaaUGCCACaUGCCG-GUCU-----------CGUG- -5'
6648 5' -53.9 NC_001847.1 + 101829 0.69 0.828093
Target:  5'- gGCCGUcuuCGGUGUGCGccguugcgccuGCCGcGAGCAg -3'
miRNA:   3'- -UGGUAau-GCCACAUGC-----------CGGU-CUCGUg -5'
6648 5' -53.9 NC_001847.1 + 31316 0.69 0.819321
Target:  5'- cGCC---GCGGgcgGCGGCCugguGGAGCGCg -3'
miRNA:   3'- -UGGuaaUGCCacaUGCCGG----UCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 90863 0.7 0.753372
Target:  5'- gGCCGggGCuGGUGUcgaGGCCGGGGC-Cg -3'
miRNA:   3'- -UGGUaaUG-CCACAug-CCGGUCUCGuG- -5'
6648 5' -53.9 NC_001847.1 + 11877 0.72 0.671403
Target:  5'- uGCUAccACGGUGUaaucugguGCGGCCGGGGUccGCg -3'
miRNA:   3'- -UGGUaaUGCCACA--------UGCCGGUCUCG--UG- -5'
6648 5' -53.9 NC_001847.1 + 106713 0.73 0.629287
Target:  5'- uCCAguugGCGGcGUGC-GCCAGGGCGCu -3'
miRNA:   3'- uGGUaa--UGCCaCAUGcCGGUCUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 94464 0.66 0.942655
Target:  5'- -gCGUUGCGGUGUuuauuguGCGGCaa-AGUACa -3'
miRNA:   3'- ugGUAAUGCCACA-------UGCCGgucUCGUG- -5'
6648 5' -53.9 NC_001847.1 + 3809 0.66 0.943124
Target:  5'- uGCCGgcACGGggcGU-CGGCCGcGAGCGu -3'
miRNA:   3'- -UGGUaaUGCCa--CAuGCCGGU-CUCGUg -5'
6648 5' -53.9 NC_001847.1 + 134236 0.66 0.938323
Target:  5'- cGCCG--GCGGgcgGCGGCCGGcGGcCGCg -3'
miRNA:   3'- -UGGUaaUGCCacaUGCCGGUC-UC-GUG- -5'
6648 5' -53.9 NC_001847.1 + 41262 0.68 0.883771
Target:  5'- uGCCAUUuuuugcCGGcGcGCGGUCAGcAGCGCg -3'
miRNA:   3'- -UGGUAAu-----GCCaCaUGCCGGUC-UCGUG- -5'
6648 5' -53.9 NC_001847.1 + 7738 0.7 0.753372
Target:  5'- cGCgGgcGCGGaGgcgGCGGCCAGGGCAa -3'
miRNA:   3'- -UGgUaaUGCCaCa--UGCCGGUCUCGUg -5'
6648 5' -53.9 NC_001847.1 + 3528 0.67 0.890824
Target:  5'- gGCCGUgGCcGacUACGGCCGcGAGCGCg -3'
miRNA:   3'- -UGGUAaUGcCacAUGCCGGU-CUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.