miRNA display CGI


Results 1 - 20 of 1731 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6649 3' -62.4 NC_001847.1 + 32914 0.66 0.620227
Target:  5'- aGCCgggGCCGCGgacgggaggaggccgGCGGCggGGCCGgGGg -3'
miRNA:   3'- -CGG---CGGCGCg--------------CGUCGaaUCGGCgCCg -5'
6649 3' -62.4 NC_001847.1 + 47987 0.66 0.619238
Target:  5'- gGCUGUCGCuCGC-GC-UGGCCaGCGuGCa -3'
miRNA:   3'- -CGGCGGCGcGCGuCGaAUCGG-CGC-CG- -5'
6649 3' -62.4 NC_001847.1 + 66518 0.66 0.619238
Target:  5'- gGCUGgaGCuGCGCGGCUggGGgCGCaGCg -3'
miRNA:   3'- -CGGCggCG-CGCGUCGAa-UCgGCGcCG- -5'
6649 3' -62.4 NC_001847.1 + 130844 0.66 0.619238
Target:  5'- aGCCGCCGCcauCGaAGCcgaGGCgGgGGCg -3'
miRNA:   3'- -CGGCGGCGc--GCgUCGaa-UCGgCgCCG- -5'
6649 3' -62.4 NC_001847.1 + 67931 0.66 0.619238
Target:  5'- uUCGaCCGCGCGCccgccGCUcGGCa-CGGCg -3'
miRNA:   3'- cGGC-GGCGCGCGu----CGAaUCGgcGCCG- -5'
6649 3' -62.4 NC_001847.1 + 83838 0.66 0.619238
Target:  5'- -gCGCCGC-CGCAGCacgGGCUggaauuGCGcGCg -3'
miRNA:   3'- cgGCGGCGcGCGUCGaa-UCGG------CGC-CG- -5'
6649 3' -62.4 NC_001847.1 + 82845 0.66 0.619238
Target:  5'- cGCCGCC-CGCGCccGC--GGUCGC-GCa -3'
miRNA:   3'- -CGGCGGcGCGCGu-CGaaUCGGCGcCG- -5'
6649 3' -62.4 NC_001847.1 + 55512 0.66 0.619238
Target:  5'- cCUGCUGCuG-GCGGCgcccGCCGCGGg -3'
miRNA:   3'- cGGCGGCG-CgCGUCGaau-CGGCGCCg -5'
6649 3' -62.4 NC_001847.1 + 50367 0.66 0.619238
Target:  5'- cGCgGCCGaCGCuaaggaCGGCgccGCCGcCGGCu -3'
miRNA:   3'- -CGgCGGC-GCGc-----GUCGaauCGGC-GCCG- -5'
6649 3' -62.4 NC_001847.1 + 9081 0.66 0.619238
Target:  5'- gGCUGCuaCGCGCGCGGggU-GCCGCu-- -3'
miRNA:   3'- -CGGCG--GCGCGCGUCgaAuCGGCGccg -5'
6649 3' -62.4 NC_001847.1 + 37302 0.66 0.619238
Target:  5'- cCCGuCCGaCGUGCuAGCcguGUgGCGGCa -3'
miRNA:   3'- cGGC-GGC-GCGCG-UCGaauCGgCGCCG- -5'
6649 3' -62.4 NC_001847.1 + 11691 0.66 0.619238
Target:  5'- gGCCGUCGC-CG-GGCcaAGCC-CGGCa -3'
miRNA:   3'- -CGGCGGCGcGCgUCGaaUCGGcGCCG- -5'
6649 3' -62.4 NC_001847.1 + 13253 0.66 0.619238
Target:  5'- gGCacgaGCUGCGCGUgauGCUga-CUGCGGUg -3'
miRNA:   3'- -CGg---CGGCGCGCGu--CGAaucGGCGCCG- -5'
6649 3' -62.4 NC_001847.1 + 25334 0.66 0.619238
Target:  5'- gGCCGgcucCCGCaucguccaCGUGGCggcGGUCGCGGCg -3'
miRNA:   3'- -CGGC----GGCGc-------GCGUCGaa-UCGGCGCCG- -5'
6649 3' -62.4 NC_001847.1 + 74413 0.66 0.619238
Target:  5'- cGCCGCgCcCGCGCccgucGUggaGGUCGUGGCg -3'
miRNA:   3'- -CGGCG-GcGCGCGu----CGaa-UCGGCGCCG- -5'
6649 3' -62.4 NC_001847.1 + 28031 0.66 0.619238
Target:  5'- aGCCGCCGCcauCGaAGCcgaGGCgGgGGCg -3'
miRNA:   3'- -CGGCGGCGc--GCgUCGaa-UCGgCgCCG- -5'
6649 3' -62.4 NC_001847.1 + 53392 0.66 0.619238
Target:  5'- aGCUGCCgGCGcCGCAgGCUgaacCCGCacGGCc -3'
miRNA:   3'- -CGGCGG-CGC-GCGU-CGAauc-GGCG--CCG- -5'
6649 3' -62.4 NC_001847.1 + 70526 0.66 0.619238
Target:  5'- gGCUGCUGgGCgGCGuGCUggcgcUGGCCGacucggaGGCg -3'
miRNA:   3'- -CGGCGGCgCG-CGU-CGA-----AUCGGCg------CCG- -5'
6649 3' -62.4 NC_001847.1 + 34838 0.66 0.619238
Target:  5'- cGCUggagGCgaGCGCGCAGC--GGgCGaCGGCa -3'
miRNA:   3'- -CGG----CGg-CGCGCGUCGaaUCgGC-GCCG- -5'
6649 3' -62.4 NC_001847.1 + 33159 0.66 0.619238
Target:  5'- gGgCGCUcugGUGgGCAGCUUuGCCGUgacGGCc -3'
miRNA:   3'- -CgGCGG---CGCgCGUCGAAuCGGCG---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.