miRNA display CGI

Results 1 - 20 of 1731 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
6649	3'	-62.4	NC_001847.1	+	97081	1.12	0.000365
	Target:  5'- gGCCGCCGCGCGCAGCUUAGCCGCGGCg -3' miRNA:   3'- -CGGCGGCGCGCGUCGAAUCGGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	52246	0.92	0.011345
	Target:  5'- gGgCGCCGCGCGCcgcGGCUUGGCUGCGGCg -3' miRNA:   3'- -CgGCGGCGCGCG---UCGAAUCGGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	98762	0.9	0.015221
	Target:  5'- cGCCGCgGCGCGC-GCUgcccgGGCCGCGGCg -3' miRNA:   3'- -CGGCGgCGCGCGuCGAa----UCGGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	100991	0.89	0.018346
	Target:  5'- aGCCGCCuCGCGCAGCgcgcucGCCGCGGCg -3' miRNA:   3'- -CGGCGGcGCGCGUCGaau---CGGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	30854	0.88	0.021524
	Target:  5'- cGCCGCCGC-UGCGGCUcuGCCGCGGCg -3' miRNA:   3'- -CGGCGGCGcGCGUCGAauCGGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	133667	0.88	0.021524
	Target:  5'- cGCCGCCGC-UGCGGCUcuGCCGCGGCg -3' miRNA:   3'- -CGGCGGCGcGCGUCGAauCGGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	1726	0.88	0.0227
	Target:  5'- cGCCGCCGCGcCGCGGCc-AGCCGCGcGCa -3' miRNA:   3'- -CGGCGGCGC-GCGUCGaaUCGGCGC-CG- -5'
6649	3'	-62.4	NC_001847.1	+	104539	0.88	0.0227
	Target:  5'- cGCCGCCGCGcCGCGGCc-AGCCGCGcGCa -3' miRNA:   3'- -CGGCGGCGC-GCGUCGaaUCGGCGC-CG- -5'
6649	3'	-62.4	NC_001847.1	+	94206	0.87	0.02394
	Target:  5'- aGgCGCUGCGCGCGGCggAGCuCGCGGCg -3' miRNA:   3'- -CgGCGGCGCGCGUCGaaUCG-GCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	94971	0.87	0.025246
	Target:  5'- uCCGCCGCGCGCAGCcc--CCGCGGCu -3' miRNA:   3'- cGGCGGCGCGCGUCGaaucGGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	103914	0.86	0.028827
	Target:  5'- cGCgGCCGCGgGCGGCgccGCCGCGGCc -3' miRNA:   3'- -CGgCGGCGCgCGUCGaauCGGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	1101	0.86	0.028827
	Target:  5'- cGCgGCCGCGgGCGGCgccGCCGCGGCc -3' miRNA:   3'- -CGgCGGCGCgCGUCGaauCGGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	134020	0.86	0.030396
	Target:  5'- cGCCGCCGC-UGguGCUggaGGCCGCGGCg -3' miRNA:   3'- -CGGCGGCGcGCguCGAa--UCGGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	31207	0.86	0.030396
	Target:  5'- cGCCGCCGC-UGguGCUggaGGCCGCGGCg -3' miRNA:   3'- -CGGCGGCGcGCguCGAa--UCGGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	133409	0.86	0.031212
	Target:  5'- aCCuCUGCGCGCGGC-UGGCCGCGGCg -3' miRNA:   3'- cGGcGGCGCGCGUCGaAUCGGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	30596	0.86	0.031212
	Target:  5'- aCCuCUGCGCGCGGC-UGGCCGCGGCg -3' miRNA:   3'- cGGcGGCGCGCGUCGaAUCGGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	70693	0.85	0.03379
	Target:  5'- cGCCGCCGCGgGCGGCggcgGGggcgcCCGCGGCg -3' miRNA:   3'- -CGGCGGCGCgCGUCGaa--UC-----GGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	34785	0.85	0.03379
	Target:  5'- gGCCGCgGCGCGCGGCUacgacCCGCGGCc -3' miRNA:   3'- -CGGCGgCGCGCGUCGAauc--GGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	130145	0.85	0.034695
	Target:  5'- cGCCGCCGC-CGC-GCUUuGCCGCGGCc -3' miRNA:   3'- -CGGCGGCGcGCGuCGAAuCGGCGCCG- -5'
6649	3'	-62.4	NC_001847.1	+	36373	0.85	0.034695
	Target:  5'- cGCCGCCGCGgcccggGCAGCgcgcGCCGCGGCg -3' miRNA:   3'- -CGGCGGCGCg-----CGUCGaau-CGGCGCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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