miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6649 5' -53.6 NC_001847.1 + 82465 0.66 0.963006
Target:  5'- cGGCCGCGuGcgGCgUGCcGUGggacgAGcCCg -3'
miRNA:   3'- aCCGGCGCuCuuUG-ACG-CACa----UCaGG- -5'
6649 5' -53.6 NC_001847.1 + 110809 0.66 0.963006
Target:  5'- aGGCCGCGc---GCgGCGUGgcGcgCCa -3'
miRNA:   3'- aCCGGCGCucuuUGaCGCACauCa-GG- -5'
6649 5' -53.6 NC_001847.1 + 113360 0.66 0.963006
Target:  5'- -cGUCGCGAGGAACUGgccguaCGUG-AGcCCc -3'
miRNA:   3'- acCGGCGCUCUUUGAC------GCACaUCaGG- -5'
6649 5' -53.6 NC_001847.1 + 97221 0.66 0.963006
Target:  5'- gGGgCGCGAGucgGGACcaaGCGUGUuGUCg -3'
miRNA:   3'- aCCgGCGCUC---UUUGa--CGCACAuCAGg -5'
6649 5' -53.6 NC_001847.1 + 84919 0.66 0.963006
Target:  5'- cGGCC-CGGGcAGCacuUGCGUGUAG-Cg -3'
miRNA:   3'- aCCGGcGCUCuUUG---ACGCACAUCaGg -5'
6649 5' -53.6 NC_001847.1 + 3825 0.66 0.959425
Target:  5'- cGGCCGCGAGcgug-GCGUu--GUUCg -3'
miRNA:   3'- aCCGGCGCUCuuugaCGCAcauCAGG- -5'
6649 5' -53.6 NC_001847.1 + 134535 0.66 0.959425
Target:  5'- gGGCCGCGcGccGCUGCGg--AGcggCCg -3'
miRNA:   3'- aCCGGCGCuCuuUGACGCacaUCa--GG- -5'
6649 5' -53.6 NC_001847.1 + 2536 0.66 0.959425
Target:  5'- gGGCCGCGGGAccGCUGCuc----UCCg -3'
miRNA:   3'- aCCGGCGCUCUu-UGACGcacaucAGG- -5'
6649 5' -53.6 NC_001847.1 + 31722 0.66 0.959425
Target:  5'- gGGCCGCGcGccGCUGCGg--AGcggCCg -3'
miRNA:   3'- aCCGGCGCuCuuUGACGCacaUCa--GG- -5'
6649 5' -53.6 NC_001847.1 + 28732 0.66 0.959425
Target:  5'- cGGCCGCGGGcAGCgucgccgcgcGCGUGcgugCCg -3'
miRNA:   3'- aCCGGCGCUCuUUGa---------CGCACaucaGG- -5'
6649 5' -53.6 NC_001847.1 + 6765 0.66 0.959425
Target:  5'- cGGCCgguGCGAGGcgccAGCUGCuccGUGG-CCa -3'
miRNA:   3'- aCCGG---CGCUCU----UUGACGca-CAUCaGG- -5'
6649 5' -53.6 NC_001847.1 + 44417 0.66 0.955612
Target:  5'- cGcGCCGCGAGcgGCUGCGU----UCg -3'
miRNA:   3'- aC-CGGCGCUCuuUGACGCAcaucAGg -5'
6649 5' -53.6 NC_001847.1 + 96410 0.66 0.955612
Target:  5'- cUGGUCGC-AGucGACUGCG---GGUCCg -3'
miRNA:   3'- -ACCGGCGcUCu-UUGACGCacaUCAGG- -5'
6649 5' -53.6 NC_001847.1 + 112770 0.66 0.955612
Target:  5'- cGGcCCGCGGGGGcCU-CGUcccaGUAGUCUg -3'
miRNA:   3'- aCC-GGCGCUCUUuGAcGCA----CAUCAGG- -5'
6649 5' -53.6 NC_001847.1 + 41630 0.66 0.955612
Target:  5'- gGGCCGcCGGGcGAgUGgGUGcGGaUCCa -3'
miRNA:   3'- aCCGGC-GCUCuUUgACgCACaUC-AGG- -5'
6649 5' -53.6 NC_001847.1 + 18716 0.66 0.953212
Target:  5'- aGcGCCGCGGGGAGCgccagcgggcggUugauucuccagagguGCGUGUgcaGGUCCu -3'
miRNA:   3'- aC-CGGCGCUCUUUG------------A---------------CGCACA---UCAGG- -5'
6649 5' -53.6 NC_001847.1 + 14174 0.66 0.951563
Target:  5'- cGGCCGCGcuu-ACgcgGCGcugGGUCCg -3'
miRNA:   3'- aCCGGCGCucuuUGa--CGCacaUCAGG- -5'
6649 5' -53.6 NC_001847.1 + 131928 0.66 0.951563
Target:  5'- cGGCgCGCGAGcgGCUGCGcg-AG-CUg -3'
miRNA:   3'- aCCG-GCGCUCuuUGACGCacaUCaGG- -5'
6649 5' -53.6 NC_001847.1 + 97818 0.66 0.951563
Target:  5'- gUGGCCGCGucGGGC-GCGUGccG-CCa -3'
miRNA:   3'- -ACCGGCGCucUUUGaCGCACauCaGG- -5'
6649 5' -53.6 NC_001847.1 + 29115 0.66 0.951563
Target:  5'- cGGCgCGCGAGcgGCUGCGcg-AG-CUg -3'
miRNA:   3'- aCCG-GCGCUCuuUGACGCacaUCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.