Results 1 - 20 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6649 | 5' | -53.6 | NC_001847.1 | + | 82465 | 0.66 | 0.963006 |
Target: 5'- cGGCCGCGuGcgGCgUGCcGUGggacgAGcCCg -3' miRNA: 3'- aCCGGCGCuCuuUG-ACG-CACa----UCaGG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 110809 | 0.66 | 0.963006 |
Target: 5'- aGGCCGCGc---GCgGCGUGgcGcgCCa -3' miRNA: 3'- aCCGGCGCucuuUGaCGCACauCa-GG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 113360 | 0.66 | 0.963006 |
Target: 5'- -cGUCGCGAGGAACUGgccguaCGUG-AGcCCc -3' miRNA: 3'- acCGGCGCUCUUUGAC------GCACaUCaGG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 97221 | 0.66 | 0.963006 |
Target: 5'- gGGgCGCGAGucgGGACcaaGCGUGUuGUCg -3' miRNA: 3'- aCCgGCGCUC---UUUGa--CGCACAuCAGg -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 84919 | 0.66 | 0.963006 |
Target: 5'- cGGCC-CGGGcAGCacuUGCGUGUAG-Cg -3' miRNA: 3'- aCCGGcGCUCuUUG---ACGCACAUCaGg -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 3825 | 0.66 | 0.959425 |
Target: 5'- cGGCCGCGAGcgug-GCGUu--GUUCg -3' miRNA: 3'- aCCGGCGCUCuuugaCGCAcauCAGG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 134535 | 0.66 | 0.959425 |
Target: 5'- gGGCCGCGcGccGCUGCGg--AGcggCCg -3' miRNA: 3'- aCCGGCGCuCuuUGACGCacaUCa--GG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 2536 | 0.66 | 0.959425 |
Target: 5'- gGGCCGCGGGAccGCUGCuc----UCCg -3' miRNA: 3'- aCCGGCGCUCUu-UGACGcacaucAGG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 31722 | 0.66 | 0.959425 |
Target: 5'- gGGCCGCGcGccGCUGCGg--AGcggCCg -3' miRNA: 3'- aCCGGCGCuCuuUGACGCacaUCa--GG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 28732 | 0.66 | 0.959425 |
Target: 5'- cGGCCGCGGGcAGCgucgccgcgcGCGUGcgugCCg -3' miRNA: 3'- aCCGGCGCUCuUUGa---------CGCACaucaGG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 6765 | 0.66 | 0.959425 |
Target: 5'- cGGCCgguGCGAGGcgccAGCUGCuccGUGG-CCa -3' miRNA: 3'- aCCGG---CGCUCU----UUGACGca-CAUCaGG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 44417 | 0.66 | 0.955612 |
Target: 5'- cGcGCCGCGAGcgGCUGCGU----UCg -3' miRNA: 3'- aC-CGGCGCUCuuUGACGCAcaucAGg -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 96410 | 0.66 | 0.955612 |
Target: 5'- cUGGUCGC-AGucGACUGCG---GGUCCg -3' miRNA: 3'- -ACCGGCGcUCu-UUGACGCacaUCAGG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 112770 | 0.66 | 0.955612 |
Target: 5'- cGGcCCGCGGGGGcCU-CGUcccaGUAGUCUg -3' miRNA: 3'- aCC-GGCGCUCUUuGAcGCA----CAUCAGG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 41630 | 0.66 | 0.955612 |
Target: 5'- gGGCCGcCGGGcGAgUGgGUGcGGaUCCa -3' miRNA: 3'- aCCGGC-GCUCuUUgACgCACaUC-AGG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 18716 | 0.66 | 0.953212 |
Target: 5'- aGcGCCGCGGGGAGCgccagcgggcggUugauucuccagagguGCGUGUgcaGGUCCu -3' miRNA: 3'- aC-CGGCGCUCUUUG------------A---------------CGCACA---UCAGG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 14174 | 0.66 | 0.951563 |
Target: 5'- cGGCCGCGcuu-ACgcgGCGcugGGUCCg -3' miRNA: 3'- aCCGGCGCucuuUGa--CGCacaUCAGG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 131928 | 0.66 | 0.951563 |
Target: 5'- cGGCgCGCGAGcgGCUGCGcg-AG-CUg -3' miRNA: 3'- aCCG-GCGCUCuuUGACGCacaUCaGG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 97818 | 0.66 | 0.951563 |
Target: 5'- gUGGCCGCGucGGGC-GCGUGccG-CCa -3' miRNA: 3'- -ACCGGCGCucUUUGaCGCACauCaGG- -5' |
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6649 | 5' | -53.6 | NC_001847.1 | + | 29115 | 0.66 | 0.951563 |
Target: 5'- cGGCgCGCGAGcgGCUGCGcg-AG-CUg -3' miRNA: 3'- aCCG-GCGCUCuuUGACGCacaUCaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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