miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6650 3' -56 NC_001847.1 + 81024 0.66 0.918261
Target:  5'- ----cGCAUGggcgACGCCGccgcGGACUGCGGg -3'
miRNA:   3'- gagcaUGUGCa---UGUGGC----CCUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 49896 0.66 0.918261
Target:  5'- -aCG-GCACGU--GCUGGGcccgGCCGCGGu -3'
miRNA:   3'- gaGCaUGUGCAugUGGCCC----UGGCGCC- -5'
6650 3' -56 NC_001847.1 + 82470 0.66 0.918261
Target:  5'- -gCGUGCgGCGUGCcgUGGGAcgagcCCGCGGc -3'
miRNA:   3'- gaGCAUG-UGCAUGugGCCCU-----GGCGCC- -5'
6650 3' -56 NC_001847.1 + 34405 0.66 0.912533
Target:  5'- -gCGgcagACGCG-GCGCUGGGgGCgGCGGa -3'
miRNA:   3'- gaGCa---UGUGCaUGUGGCCC-UGgCGCC- -5'
6650 3' -56 NC_001847.1 + 122366 0.66 0.912533
Target:  5'- aUCG-ACugGUACuuccugcggacgGCCGGcGACUGCGc -3'
miRNA:   3'- gAGCaUGugCAUG------------UGGCC-CUGGCGCc -5'
6650 3' -56 NC_001847.1 + 51564 0.66 0.912533
Target:  5'- gCUCGccaGCGCuuccgcgGCGCCGGGgcaGCCGuCGGg -3'
miRNA:   3'- -GAGCa--UGUGca-----UGUGGCCC---UGGC-GCC- -5'
6650 3' -56 NC_001847.1 + 60287 0.66 0.912533
Target:  5'- -aUGUugAUcgGCAgCGGGGCgGCGGg -3'
miRNA:   3'- gaGCAugUGcaUGUgGCCCUGgCGCC- -5'
6650 3' -56 NC_001847.1 + 112451 0.66 0.912533
Target:  5'- -gCGUACGucgaGUACAgCGcGGACCGCc- -3'
miRNA:   3'- gaGCAUGUg---CAUGUgGC-CCUGGCGcc -5'
6650 3' -56 NC_001847.1 + 98872 0.66 0.912533
Target:  5'- -cCGgaaggGCGCGUGCGCCuGGGCgGCc- -3'
miRNA:   3'- gaGCa----UGUGCAUGUGGcCCUGgCGcc -5'
6650 3' -56 NC_001847.1 + 134493 0.66 0.912533
Target:  5'- --aGUGCACGgguguagugUGgGCCGuGcGGCCGCGGc -3'
miRNA:   3'- gagCAUGUGC---------AUgUGGC-C-CUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 86708 0.66 0.906574
Target:  5'- cCUCgGUGCugGUGCucaacuccaCGcGGcCCGCGGa -3'
miRNA:   3'- -GAG-CAUGugCAUGug-------GC-CCuGGCGCC- -5'
6650 3' -56 NC_001847.1 + 106063 0.66 0.906574
Target:  5'- gCUCGccggcgGCAgGgGCGCCGGcGCCGCGcGg -3'
miRNA:   3'- -GAGCa-----UGUgCaUGUGGCCcUGGCGC-C- -5'
6650 3' -56 NC_001847.1 + 134221 0.66 0.906574
Target:  5'- gCUCGgGCuucccggcgccgGCGggcgGCgGCCGGcGGCCGCGGc -3'
miRNA:   3'- -GAGCaUG------------UGCa---UG-UGGCC-CUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 96808 0.66 0.906574
Target:  5'- gUCGggggGCGCGcaGCGgCGGcGACCGCGcGg -3'
miRNA:   3'- gAGCa---UGUGCa-UGUgGCC-CUGGCGC-C- -5'
6650 3' -56 NC_001847.1 + 74096 0.66 0.906574
Target:  5'- aUUGgcacGCugGUGC-CCGGGgcgGCCGCGc -3'
miRNA:   3'- gAGCa---UGugCAUGuGGCCC---UGGCGCc -5'
6650 3' -56 NC_001847.1 + 3250 0.66 0.906574
Target:  5'- gCUCGccggcgGCAgGgGCGCCGGcGCCGCGcGg -3'
miRNA:   3'- -GAGCa-----UGUgCaUGUGGCCcUGGCGC-C- -5'
6650 3' -56 NC_001847.1 + 31408 0.66 0.906574
Target:  5'- gCUCGgGCuucccggcgccgGCGggcgGCgGCCGGcGGCCGCGGc -3'
miRNA:   3'- -GAGCaUG------------UGCa---UG-UGGCC-CUGGCGCC- -5'
6650 3' -56 NC_001847.1 + 32060 0.66 0.906574
Target:  5'- -cCGggGCGCGgagACgGCgGGGGCCGgGGa -3'
miRNA:   3'- gaGCa-UGUGCa--UG-UGgCCCUGGCgCC- -5'
6650 3' -56 NC_001847.1 + 69185 0.66 0.902889
Target:  5'- -gCGU-CACGUcccgcgcgagcuccaGCGCCuGGGcguCCGCGGg -3'
miRNA:   3'- gaGCAuGUGCA---------------UGUGG-CCCu--GGCGCC- -5'
6650 3' -56 NC_001847.1 + 103487 0.66 0.900387
Target:  5'- cCUCGggGCGCGcggGCuCCGGGcCCGCc- -3'
miRNA:   3'- -GAGCa-UGUGCa--UGuGGCCCuGGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.