miRNA display CGI


Results 21 - 40 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6651 3' -61.3 NC_001847.1 + 61380 0.66 0.628732
Target:  5'- -cGUagCGGCcCGCGCCGCCGcccGGCg- -3'
miRNA:   3'- ccCAagGUCGuGCGCGGCGGU---CCGaa -5'
6651 3' -61.3 NC_001847.1 + 104201 0.66 0.628732
Target:  5'- -----gCAGCACGCGCUGCC-GGUa- -3'
miRNA:   3'- cccaagGUCGUGCGCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 105612 0.66 0.628732
Target:  5'- aGGGccgCgAGCGCG-GCCGCCAGccGCg- -3'
miRNA:   3'- -CCCaa-GgUCGUGCgCGGCGGUC--CGaa -5'
6651 3' -61.3 NC_001847.1 + 131889 0.66 0.628732
Target:  5'- cGGcgCCGGCGCcccUGCCGCC-GGCg- -3'
miRNA:   3'- cCCaaGGUCGUGc--GCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 134218 0.66 0.628732
Target:  5'- cGGGcUCgGGCuucccgGCGCCGgCGGGCg- -3'
miRNA:   3'- -CCCaAGgUCGug----CGCGGCgGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 60245 0.66 0.628732
Target:  5'- aGGG--CUAGCACgGCGCCGacuucgCAGGCg- -3'
miRNA:   3'- -CCCaaGGUCGUG-CGCGGCg-----GUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 3917 0.66 0.628732
Target:  5'- cGGGcgCCGGuUGCGCGcCCGCgCuGGCg- -3'
miRNA:   3'- -CCCaaGGUC-GUGCGC-GGCG-GuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 31405 0.66 0.628732
Target:  5'- cGGGcUCgGGCuucccgGCGCCGgCGGGCg- -3'
miRNA:   3'- -CCCaAGgUCGug----CGCGGCgGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 106730 0.66 0.628732
Target:  5'- cGGGcgCCGGuUGCGCGcCCGCgCuGGCg- -3'
miRNA:   3'- -CCCaaGGUC-GUGCGC-GGCG-GuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 115808 0.66 0.628732
Target:  5'- cGGcUCCGcGCGCuGCGCUGCggCGGGCUc -3'
miRNA:   3'- cCCaAGGU-CGUG-CGCGGCG--GUCCGAa -5'
6651 3' -61.3 NC_001847.1 + 29076 0.66 0.628732
Target:  5'- cGGcgCCGGCGCcccUGCCGCC-GGCg- -3'
miRNA:   3'- cCCaaGGUCGUGc--GCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 120022 0.66 0.628732
Target:  5'- aGG--CCAGCAC-CGCCGCCgucaGGGCc- -3'
miRNA:   3'- cCCaaGGUCGUGcGCGGCGG----UCCGaa -5'
6651 3' -61.3 NC_001847.1 + 2799 0.66 0.628732
Target:  5'- aGGGccgCgAGCGCG-GCCGCCAGccGCg- -3'
miRNA:   3'- -CCCaa-GgUCGUGCgCGGCGGUC--CGaa -5'
6651 3' -61.3 NC_001847.1 + 1388 0.66 0.628732
Target:  5'- -----gCAGCACGCGCUGCC-GGUa- -3'
miRNA:   3'- cccaagGUCGUGCGCGGCGGuCCGaa -5'
6651 3' -61.3 NC_001847.1 + 87218 0.66 0.628732
Target:  5'- cGGGUUCCAaCuggaaGCGCUGCgCAGcGCUc -3'
miRNA:   3'- -CCCAAGGUcGug---CGCGGCG-GUC-CGAa -5'
6651 3' -61.3 NC_001847.1 + 4371 0.66 0.625708
Target:  5'- ---cUCCAccgcgaccgcgagcGCGCGCGCCGCggccCAGGCg- -3'
miRNA:   3'- cccaAGGU--------------CGUGCGCGGCG----GUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 107184 0.66 0.625708
Target:  5'- ---cUCCAccgcgaccgcgagcGCGCGCGCCGCggccCAGGCg- -3'
miRNA:   3'- cccaAGGU--------------CGUGCGCGGCG----GUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 107092 0.66 0.618654
Target:  5'- aGGUUuuccgCCAGCA-GCGCCGCgucuggcgugugCAGGCg- -3'
miRNA:   3'- cCCAA-----GGUCGUgCGCGGCG------------GUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 18189 0.66 0.618654
Target:  5'- aGGGcagCCGGa--GCaCCGCCAGGCa- -3'
miRNA:   3'- -CCCaa-GGUCgugCGcGGCGGUCCGaa -5'
6651 3' -61.3 NC_001847.1 + 125200 0.66 0.618654
Target:  5'- uGGGgggUCCGagucccagacGCugGCaGCCGCCugccGGGCg- -3'
miRNA:   3'- -CCCa--AGGU----------CGugCG-CGGCGG----UCCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.